View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0103_low_1 (Length: 440)
Name: NF0103_low_1
Description: NF0103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0103_low_1 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 196 - 431
Target Start/End: Original strand, 16699906 - 16700141
Alignment:
| Q |
196 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactacttaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
295 |
Q |
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| T |
16699906 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactactcaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
16700005 |
T |
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| Q |
296 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
395 |
Q |
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| T |
16700006 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
16700105 |
T |
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| Q |
396 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
431 |
Q |
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| T |
16700106 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
16700141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 16699644 - 16699797
Alignment:
| Q |
7 |
gaaatattttaatcgtt-gttgagctttt-cttcataatcagtcnnnnnnntgtttttcttcgtaaagtaataagtcatagtagtcaagaagnnnnnnnn |
104 |
Q |
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| T |
16699644 |
gaaatattttaatcgtttgttgagctttttcttcataatcagtcaaaaaaatgtttttcttcgtaaagtaataagtcattgtagtcaagaagtttttttt |
16699743 |
T |
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| Q |
105 |
nnnnnnnnnngaatggattaattgtagtcaagaaattatttaatttatttcatct |
159 |
Q |
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| T |
16699744 |
tcttttttt-gaatggattaattgtagtcaagaaattttttaatttatttcatct |
16699797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Original strand, 22846323 - 22846358
Alignment:
| Q |
396 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
431 |
Q |
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| T |
22846323 |
aagcttgctttgcatgtgttgttgttttgatgatgt |
22846358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 17322578 - 17322679
Alignment:
| Q |
271 |
tgtgatgaattttacgttgttagagaaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtg |
370 |
Q |
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|||||||||||||| | |||| |||||| || |||| |||||| ||||| |||||||| |||||| || ||||||||| || |||||| |||||| || |
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| T |
17322578 |
tgtgatgaattttagatggttaaagaaggggaaacctattatagtatagcggagaagtgtgatgatcaatctatcttgttctccaatccaaatgtccatg |
17322677 |
T |
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| Q |
371 |
at |
372 |
Q |
| |
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|| |
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| T |
17322678 |
at |
17322679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 36005 - 35971
Alignment:
| Q |
397 |
agcttgctttgcttgtgttgttgttttgatgatgt |
431 |
Q |
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| T |
36005 |
agcttgctttgcctgtgttgttgttttgatgatgt |
35971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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