View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_high_3 (Length: 438)
Name: NF0104_high_3
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 428
Target Start/End: Original strand, 22854111 - 22854509
Alignment:
| Q |
30 |
ttaagcacaataaaatgctactataatggttaatgtttttcattctcttcctactcataatttgataatattgctttcatcatttctatcacaatcaaaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22854111 |
ttaagcacaataaaatgctactataatggttaatgtttttcattctcttcctactcataatttgataatattgctttcatcatttctatcacaatcaaaa |
22854210 |
T |
|
| Q |
130 |
ctataaatttcaaatttgggttgaaatttttccaagttgacaagtactttacacgagtactataattgtttccggtcccctctctttggttaagtaaagc |
229 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22854211 |
ctataaatttcaaaattgggttgaaatttgtccaagttgacaagtactttacacgagtactataattgtttccggtcccctctctttggttaagtaaagc |
22854310 |
T |
|
| Q |
230 |
cattgtcaaagagagttttattcgcatctcattcttcaagtcgctaacttcttatctatagtgaaagatgtccacgcttcgaggaagaaccaattaattt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22854311 |
cattgtcaaagagagttttattcgcatctcattcttcaagtcgctaacttcttatctatagtgaaatatgtccacgcttcgaggaagaaccaattaattt |
22854410 |
T |
|
| Q |
330 |
gagaggtaacccttatagcactctttgtttatcttctgaacacatataacatggaatccaacaatctcccaaacatctaaaaaagaacaatgaagaata |
428 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
22854411 |
gagaggtaacccttttagcactctttgtttatcttctgaacacatataacatggaatccaaccatttcccaatcatctaaaaaagaacaatgaagaata |
22854509 |
T |
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