View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0104_high_8 (Length: 252)
Name: NF0104_high_8
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 8918574 - 8918816
Alignment:
| Q |
1 |
acggcactataaattaattgatcattggaggatcaagtattcatagaattctgaataagaaacaaaattatacgacatatgcaaatgggtttgtacgtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8918574 |
acggcactataaattaattgatcattggaggatcaagtattcatagaattctgaataagaaacaaaattatacgacatatgcaaatgggtttgtacgtgg |
8918673 |
T |
|
| Q |
101 |
ccatttattttatcctgttcgcacgtgtacatatatatagtgtgtgcatgctcttgatgcatcatatcctcatgcaattgagttcaaatatagtnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8918674 |
ccatttattttatcctgtttgcacgtgtacatatatatagtgtgtgcatgctcttgatgcatcatatcctcatgcaattgagttcaaatatagt-aaaaa |
8918772 |
T |
|
| Q |
201 |
nntattaagagatttttattctgtgtttcttaagaattcatctc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8918773 |
aatattaagagatttttattctgtgtttcttaagaattcatctc |
8918816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1284 times since January 2019
Visitors: 1417