View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0104_low_11 (Length: 308)

Name: NF0104_low_11
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0104_low_11
NF0104_low_11
[»] chr3 (4 HSPs)
chr3 (30-298)||(21728241-21728509)
chr3 (63-126)||(50880229-50880292)
chr3 (67-131)||(11348182-11348246)
chr3 (30-66)||(47430928-47430964)
[»] chr8 (1 HSPs)
chr8 (30-66)||(9244398-9244434)
[»] chr7 (3 HSPs)
chr7 (30-66)||(29186997-29187033)
chr7 (30-66)||(12630903-12630939)
chr7 (82-131)||(18852095-18852144)
[»] chr4 (1 HSPs)
chr4 (30-66)||(18091923-18091959)
[»] chr1 (1 HSPs)
chr1 (30-66)||(52759706-52759742)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 298
Target Start/End: Original strand, 21728241 - 21728509
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaacaaacatttcaattaaacagtaccaagaacttcttaacttcaacaaccatggcagcatctact 129  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||||   | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  21728241 caacaccctgcaatcactccatcataatcatcccaaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatggcagcatctact 21728340  T
Q  130 ctcgtttgagaattttataattttctgatgaatatgttgtattttgttagcataaaatccccgctaattttgattcccattacttgttgaagcgcaaatg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   | |||||||||||||||| |  || ||| |||||||    
T  21728341 ctcgtttgagaattttataattttctgatgaatatgttgtattttgttagcataaaacccctattgattttgattcccattattcattcaagagcaaatg 21728440  T
Q  230 aaattcgaaattttgatggagttatttaaatcattaagccacgaatctattccttaaaatttccctatg 298  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  21728441 aaattcgaaattttgatggagttatctaaatcattaagccatgaatctattccttaaaatttccctatg 21728509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 50880229 - 50880292
Alignment:
Q  63 caaacaaacatttcaattaaacagtaccaagaacttcttaacttcaacaaccatggcagcatct 126  Q
    ||||||| |||||||   |||||||| ||| |||||||||||||||||||||||||||||||||    
T  50880229 caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatct 50880292  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 11348246 - 11348182
Alignment:
Q  67 caaacatttcaattaaacagtaccaagaacttcttaacttcaacaaccatggcagcatctactct 131  Q
    |||||||||||   || ||||| ||| |||| |||||||||||||||||||||||||||| ||||    
T  11348246 caaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatggcagcatcttctct 11348182  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 47430964 - 47430928
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    ||||||||||||||||||||| |||||||||||||||    
T  47430964 caacaccctccaatcactccaccataaccatcccaaa 47430928  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 9244398 - 9244434
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  9244398 caacaccctccaatcactccatcataaccatcccaaa 9244434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 29186997 - 29187033
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    |||||||||||||||||||||||||||||||||||||    
T  29186997 caacaccctccaatcactccatcataaccatcccaaa 29187033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 12630903 - 12630939
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    ||||||||||||||||||||| |||||||||||||||    
T  12630903 caacaccctccaatcactccaccataaccatcccaaa 12630939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 18852144 - 18852095
Alignment:
Q  82 aacagtaccaagaacttcttaacttcaacaaccatggcagcatctactct 131  Q
    ||||||| |||  ||| |||||||||||||||||||||||||||| ||||    
T  18852144 aacagtagcaatcactccttaacttcaacaaccatggcagcatcttctct 18852095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 18091923 - 18091959
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18091923 caacaccctccaatcactccaccataaccatcccaaa 18091959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 52759706 - 52759742
Alignment:
Q  30 caacaccctccaatcactccatcataaccatcccaaa 66  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52759706 caacaccctccaatcactccaccataaccatcccaaa 52759742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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