View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0104_low_13 (Length: 252)
Name: NF0104_low_13
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_13 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 37051067 - 37051220
Alignment:
| Q |
3 |
actagaatagaatagaatacaatttacacatgaaacatgaaagatgaagtaatttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaat |
102 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37051067 |
actagactagaatagaacacaatttacacatgcaacatcaaagatgaagtaatttaccagttgtacgaccactcgcataaagggaaagcacagcttgaat |
37051166 |
T |
|
| Q |
103 |
agcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcatttt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37051167 |
agcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcatttt |
37051220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 8689063 - 8688966
Alignment:
| Q |
56 |
ttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcat |
153 |
Q |
| |
|
||||| || ||||||||||| || || |||||||| || || ||||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
8689063 |
ttaccggtggtacgaccactggcgtacagtgaaagaacggcctgaatagcaacatacatagcaggggtattaaaagtctcaaacatgatttgagtcat |
8688966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 67410 - 67309
Alignment:
| Q |
55 |
tttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcatt |
154 |
Q |
| |
|
|||||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||| |||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
67410 |
tttaccggttgtacggccactagcataaagcgaaagcacagcctgaatggcaacatacatagctggagcattgaaggtctcaaacataatctgagtcatt |
67311 |
T |
|
| Q |
155 |
tt |
156 |
Q |
| |
|
|| |
|
|
| T |
67310 |
tt |
67309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 41387866 - 41387772
Alignment:
| Q |
62 |
gttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcatttt |
156 |
Q |
| |
|
||||| |||||||| ||||| || || || || || ||||||||||||||||||||||| || ||||||||||||||||| || || |||||||| |
|
|
| T |
41387866 |
gttgttcgaccactggcatagagcgatagaacggcctgaatagcaacatacatagcaggtgtgttgaatgtctcaaacataatttgtgtcatttt |
41387772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 59936 - 60033
Alignment:
| Q |
56 |
ttaccagttgtacgaccactcgcataaagtgaaagcacagcttgaatagcaacatacatagcaggagtattgaatgtctcaaacatgatctgagtcat |
153 |
Q |
| |
|
||||| |||||||||||||| || || |||||||| || || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| |
|
|
| T |
59936 |
ttaccggttgtacgaccactggcgtagagtgaaagaacggcctgaatggccacatacatagcaggggcattgaaagtctcaaacatgatttgggtcat |
60033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1682 times since January 2019
Visitors: 1426