View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_low_17 (Length: 249)
Name: NF0104_low_17
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_17 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 39537782 - 39537870
Alignment:
| Q |
7 |
ataagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtccataacgtctgtg |
95 |
Q |
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| T |
39537782 |
ataagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtccataacgtctgtg |
39537870 |
T |
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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 1552832 - 1552918
Alignment:
| Q |
9 |
aagagccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtccataacgtctgtg |
95 |
Q |
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| T |
1552832 |
aagagccattcttgcctgcattcctctgaccattctcggtatgatccaatctccaagtgtttcgtaattgcatccataacatctgtg |
1552918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 2298642 - 2298710
Alignment:
| Q |
181 |
aaatactatacatgttcaattaagatttatacttcacttcgctcaaaactatgatattctacgagtttt |
249 |
Q |
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| T |
2298642 |
aaatactataaatgttcaattagtctttatacttcacttggctcaaaactatgttattctacgagtttt |
2298710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 30907576 - 30907652
Alignment:
| Q |
12 |
agccattcctgcctgcgctcctctgaccattctctgtaagatccaatctgcaggtgttttgtaattgcgtccataac |
88 |
Q |
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| T |
30907576 |
agccattcctgcctgcgttcctcagaccattctcgataagatccaatctccaagtggtttgttatagcatccataac |
30907652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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