View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_low_18 (Length: 248)
Name: NF0104_low_18
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_18 |
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| [»] chr1 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 11026702 - 11026474
Alignment:
| Q |
20 |
catcatcaatatgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgt |
119 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026702 |
catcatcaatatgaattttcatttcctcttcatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgt |
11026603 |
T |
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| Q |
120 |
gatcttccttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctgga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11026602 |
gatcttccttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctgga |
11026503 |
T |
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| Q |
220 |
gcaatgtaccccaatgttcctctagctgc |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11026502 |
gcaatgtaccccaatgttcctctagctgc |
11026474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 10993246 - 10993018
Alignment:
| Q |
20 |
catcatcaatatgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgt |
119 |
Q |
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|||| |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10993246 |
catcgtcaacatgaattctcatttcctcttcatcatctataagtttataaatccattccggatagtaaacatgactactgttttcctctaaatcctctgt |
10993147 |
T |
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| Q |
120 |
gatcttccttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctgga |
219 |
Q |
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| T |
10993146 |
gattttcttccctcctattgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctgga |
10993047 |
T |
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| Q |
220 |
gcaatgtaccccaatgttcctctagctgc |
248 |
Q |
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| T |
10993046 |
gcaatgtaccccaatgttcctctagctgc |
10993018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 10907158 - 10906931
Alignment:
| Q |
20 |
catcatcaatatgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgt |
119 |
Q |
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||||||||| ||||||| ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10907158 |
catcatcaacatgaattctcatttcgtcttgatcatctataagattatcaatccactccggatagtaaacatg-ctactgttttcctctaagtcctctgt |
10907060 |
T |
|
| Q |
120 |
gatcttccttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctgga |
219 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10907059 |
tatcttcttccctcctattgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctgga |
10906960 |
T |
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| Q |
220 |
gcaatgtaccccaatgttcctctagctgc |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10906959 |
gcaatgtaccccaatgttcctctagctgc |
10906931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 38 - 248
Target Start/End: Complemental strand, 10931024 - 10930814
Alignment:
| Q |
38 |
tcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgtgatcttccttcctcctat |
137 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| |
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| T |
10931024 |
tcatttcctcttgatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaagtcctctgttatcttcttccctcctat |
10930925 |
T |
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| Q |
138 |
tgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgtaccccaatgtt |
237 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| |
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| T |
10930924 |
tgtttcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagtt |
10930825 |
T |
|
| Q |
238 |
cctctagctgc |
248 |
Q |
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||||||||||| |
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| T |
10930824 |
cctctagctgc |
10930814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 11041405 - 11041180
Alignment:
| Q |
20 |
catcatcaatatgaattttcatttcctcttgatcatctataagattataaatccattccggatagtaaacatgactactgttttcctctaagtcctctgt |
119 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11041405 |
catcatcaacatgaattctcatttcctcttcatcatctataagattataaatccactccggatagtaaacatgactactgttttcctctaaatcctctgt |
11041306 |
T |
|
| Q |
120 |
gatcttccttcctcctattgtttcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctgga |
219 |
Q |
| |
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||||||| | |||||||| |||||||||||||||||||||||||| |||||||| |||||| ||||||| ||||| |||||||||||||||||||||||| |
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| T |
11041305 |
gatcttcttccctcctatcgtttcaagcaacatcattccataactataaacatccgatttgaaagacacgtttccaaagttccttgaaaaaacttctgga |
11041206 |
T |
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| Q |
220 |
gcaatgtaccccaatgttcctctagc |
245 |
Q |
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|||||||| ||||| ||||||||||| |
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| T |
11041205 |
gcaatgtagcccaaagttcctctagc |
11041180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 248
Target Start/End: Complemental strand, 9378084 - 9377981
Alignment:
| Q |
145 |
agcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctctag |
244 |
Q |
| |
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||||||| ||||| || || |||| ||| || |||||||| |||||||||||||| ||||| |||||||| || |||||||| |||||||||||||||| |
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| T |
9378084 |
agcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctag |
9377985 |
T |
|
| Q |
245 |
ctgc |
248 |
Q |
| |
|
|||| |
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|
| T |
9377984 |
ctgc |
9377981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 9495644 - 9495562
Alignment:
| Q |
145 |
agcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgta |
227 |
Q |
| |
|
||||||| ||||||| |||| |||||||| || ||||| ||||||||||| |||||||| || ||||||||||| || ||||| |
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| T |
9495644 |
agcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgta |
9495562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 9236146 - 9236252
Alignment:
| Q |
142 |
tcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctc |
241 |
Q |
| |
|
|||||||||| ||| || || || |||| ||| || || ||||| |||||||||||||| || || |||||||| || |||||||| ||||| ||||||| |
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|
| T |
9236146 |
tcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctc |
9236245 |
T |
|
| Q |
242 |
tagctgc |
248 |
Q |
| |
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| ||||| |
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|
| T |
9236246 |
tcgctgc |
9236252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 31145387 - 31145428
Alignment:
| Q |
140 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
181 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31145387 |
tttctagcaacatcattccataactataaacatcagatttgt |
31145428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 31171700 - 31171741
Alignment:
| Q |
140 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
181 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31171700 |
tttctagcaacatcattccataactataaacatcagatttgt |
31171741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 31189445 - 31189486
Alignment:
| Q |
140 |
tttcaagcaacatcattccataactgtaaacatctgatttgt |
181 |
Q |
| |
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|||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
31189445 |
tttccagcaacatcattccataactataaacatcagatttgt |
31189486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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