View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_low_4 (Length: 408)
Name: NF0104_low_4
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 14854304 - 14853988
Alignment:
| Q |
1 |
cgaggagagagagtgaagtgcggtgggaaagatcggcggtgagagagggtgtggaagaaagtagggaggtgaatgttgataattcagggaaggttgaaag |
100 |
Q |
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| T |
14854304 |
cgaggagagagagtgaagtgcggtgggaaagatcagcggtgagagggggtgtggaagaaagtagggaggtgaatgttgataattcagggaaggttgaaag |
14854205 |
T |
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| Q |
101 |
gagggaggtgaggttgaaagagaaagatggtgttggggataggattaggaaatatagcataaatgtgagggtaatttggggaaataaagtcattgttata |
200 |
Q |
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| T |
14854204 |
gagggaggtgaggttgaaagagaaagatggtgttggggataggattaggaaatatagcataaatgtgagggtaatttggggaaataaagtcattgttata |
14854105 |
T |
|
| Q |
201 |
gatattgttatgttagtgtttatctatgatgatggtggatctgggtttgggtttagatttggtgtaccgaaaaatgaatgagttatggtgtgtagtgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14854104 |
gatattgttatgttagtgtttatctatgatgatggtggatctgggtttgggtttagatttggtgtaacgaaaaatgaatgagttatggtgtgtagtgttg |
14854005 |
T |
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| Q |
301 |
tgaagttgagttgatga |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
14854004 |
tgaagttgagttgatga |
14853988 |
T |
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