View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_low_5 (Length: 396)
Name: NF0104_low_5
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 396
Target Start/End: Original strand, 48449858 - 48450244
Alignment:
| Q |
10 |
atgaataaaaatgagaaggatgtaaatattgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtgg |
109 |
Q |
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| T |
48449858 |
atgaataaaagggagaaggatgtaaatattgaggaaaacatggtggaaactagtaatgaagagagagtaaatagagctaattggatagagaggcttgtgg |
48449957 |
T |
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| Q |
110 |
aaattaagaaacattggagaaacaggttaccgaaagaaagcgttgatatggacgtgatgtgcgacgattatacatctggtgaatgtgattgtgacgatga |
209 |
Q |
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| T |
48449958 |
aaattaagaaacattggagaaacaggttaccgaaagaaagcgttgatatggacgtgatgtgcgacgattatacatctggtgaatgtgattgtgacgatga |
48450057 |
T |
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| Q |
210 |
cagtgtttgtatggcggattatgacgatgaagaagaaggtgggcaagaagtgacacatgatcgcgattcgttctcaaaatttcttgtacaagtgtcattg |
309 |
Q |
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| T |
48450058 |
cagtgtttgtatagcggattatgacgatgaagaagaaggtgggcaagaagtgacacatgatcgcgattcgttctcaaaatttcttgtacaagtgtcattg |
48450157 |
T |
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| Q |
310 |
tctgataccaaactttactctcagctagctttcctgtgcaacatggcttacgtcataccccaaatcaaggtaagcacaaatttgcat |
396 |
Q |
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| T |
48450158 |
tctgataccaaactttactctcagctagctttcctgtgcaacatggcttacgtaataccccaaatcaaggtaagcacaaatttgcat |
48450244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 28218327 - 28218277
Alignment:
| Q |
335 |
tagctttcctgtgcaacatggcttacgtcataccccaaatcaaggtaagca |
385 |
Q |
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| T |
28218327 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28218277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 385
Target Start/End: Complemental strand, 28229209 - 28229159
Alignment:
| Q |
335 |
tagctttcctgtgcaacatggcttacgtcataccccaaatcaaggtaagca |
385 |
Q |
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| T |
28229209 |
tagctttcctttgcaacatggcttatgtaatacaccaaatcaagataagca |
28229159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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