View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0104_low_8 (Length: 352)
Name: NF0104_low_8
Description: NF0104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0104_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 11026183 - 11026011
Alignment:
| Q |
83 |
cagcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatt |
182 |
Q |
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| T |
11026183 |
cagcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatt |
11026084 |
T |
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| Q |
183 |
tagtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
255 |
Q |
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| T |
11026083 |
tagtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
11026011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 11040878 - 11040714
Alignment:
| Q |
91 |
aaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatttagtatct |
190 |
Q |
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| T |
11040878 |
aaaccgatcaaacgaacaatattaacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatct |
11040779 |
T |
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| Q |
191 |
tcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
255 |
Q |
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| T |
11040778 |
tcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
11040714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 10930523 - 10930351
Alignment:
| Q |
83 |
cagcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatt |
182 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
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| T |
10930523 |
cagcacagaaaccgaccaatctaacaatattaacatgatggattctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacatt |
10930424 |
T |
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| Q |
183 |
tagtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
255 |
Q |
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||||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
10930423 |
tagtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcct |
10930351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 83 - 255
Target Start/End: Complemental strand, 10992727 - 10992555
Alignment:
| Q |
83 |
cagcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacatt |
182 |
Q |
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||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| ||| |
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| T |
10992727 |
cagcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatt |
10992628 |
T |
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| Q |
183 |
tagtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcct |
255 |
Q |
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||||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| ||||||||| |
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| T |
10992627 |
tagtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcct |
10992555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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