View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105-INSERTION-1 (Length: 517)
Name: NF0105-INSERTION-1
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105-INSERTION-1
Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 43538044 - 43538221
Alignment:
Q
156
tatatatatgatttgtaacactttaaactaatcactcaagcaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt
255
Q
||||||||||| |||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43538044
tatatatatgacttgtaacactgtaaattaatcactcaagtaataatatagaactataattgtttccaaatcaatcgtaaacgattgtgttcattgtctt
43538143
T
Q
256
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattg
333
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
43538144
gtgatttatcttttttattattcttatgttgctagttgttgttctaataaaaatgtctttgactcgtttaatcaattg
43538221
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 43537943 - 43538036
Alignment:
Q
7
gttttgattggtgagtatggctcataggcacaaaaagatcggtaaggagcgagagagttgagcgagcgtcgtgacatttgctccttttctttcat
101
Q
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||
T
43537943
gttttgattggtgagtatggctcataggcacaaaa-gatcggtaaggggcgagagagttgagcgaccgtcgtgacatttgctcctattctttcat
43538036
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 434 - 517
Target Start/End: Original strand, 43537860 - 43537947
Alignment:
Q
434
aattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataatcacac----tatgaaaccatattagctggtttt
517
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
T
43537860
aattgtaagactttggacacatcgtatgtgaaatagatttttgttgtcaaataatcacactatatatgaaaccatattagctggtttt
43537947
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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