View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105-INSERTION-2 (Length: 483)
Name: NF0105-INSERTION-2
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105-INSERTION-2 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 8697018 - 8696751
Alignment:
| Q |
28 |
gatcaattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatg |
127 |
Q |
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| T |
8697018 |
gatcaattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatg |
8696919 |
T |
|
| Q |
128 |
ggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatc |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
8696918 |
ggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatatattctacat- |
8696820 |
T |
|
| Q |
228 |
atggtaatataatgcatgcttaattagcacaataacaccgatgctaatatcagatttttgaccgactaactcttattaatttt |
310 |
Q |
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| T |
8696819 |
--------------catgcttaattagcacaataacaccgatgctaatatcagatttttgaccgactaactcttattaatttt |
8696751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 8677666 - 8677916
Alignment:
| Q |
32 |
aattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaa |
131 |
Q |
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| T |
8677666 |
aattatactttaaaacgtgtaaaccataaagtttgaccaacaatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaa |
8677765 |
T |
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| Q |
132 |
tttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatgg |
231 |
Q |
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| T |
8677766 |
tttactccaaatcagtataaatagtttcctcgtatctcatcaaggtggacaatctttaatatggatctaatgattatctattat--attctacatcatgg |
8677863 |
T |
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| Q |
232 |
taat-------ataatgcatgcttaattagcacaataacaccgatgctaatat |
277 |
Q |
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|| | |||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
8677864 |
tactataatgcataatgcatgcttaattaacacaataacgcggatgctaatat |
8677916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 312 - 483
Target Start/End: Complemental strand, 8696724 - 8696557
Alignment:
| Q |
312 |
tcttcttgcttagcgcaactcattgcacgtaataatggactttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagca |
411 |
Q |
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| T |
8696724 |
tcttcttgcttagcgcaactcattgcacgtaataatggacttcaataaaagcaacatgg-aca--attacagcaaagaaaagaaacaaaatagctaagca |
8696628 |
T |
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| Q |
412 |
taaattgtatgtgaggatttgaccca-aaaatttgcatgtgggaactctctatataagtaacaaaacccatta |
483 |
Q |
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| T |
8696627 |
taaattgtatgtggggatttgacccaaaaaatttgcatgtgggaa--ctctatataagtaacaaaacccatta |
8696557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 350 - 483
Target Start/End: Original strand, 8692561 - 8692693
Alignment:
| Q |
350 |
actttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagcataaattgtatgtgaggatttgaccc-aaaaatttgcat |
448 |
Q |
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|||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| |||||| |
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| T |
8692561 |
acttcaataaaagcaacatgggaca--attacagcaaagaaaagaaacaaaatagttaagcataaattgtatgtgggggtttgacccaaaaaacttgcat |
8692658 |
T |
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| Q |
449 |
gtgggaactctctatataagtaacaaaacccatta |
483 |
Q |
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| T |
8692659 |
gtgggaactctctatataaataacaaaacccatta |
8692693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 8673612 - 8673655
Alignment:
| Q |
72 |
caatattacttcacacaccacttcactcaaataagaaaaacaag |
115 |
Q |
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| T |
8673612 |
caatattacttcacacaccacttcactcaaataaggaaaacaag |
8673655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 8678379 - 8678446
Alignment:
| Q |
389 |
aaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaa--tttgcatgtgggaa |
455 |
Q |
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| T |
8678379 |
aaaagaaacaaaatagctaagcat-aattgcatgtggggatttgaccaaaaaaatattgcatgtgggaa |
8678446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 8692312 - 8692377
Alignment:
| Q |
58 |
aaaagtttgaccaa-caatattacttcacacaccacttcactcaaataagaaaaacaagcttctta |
122 |
Q |
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||||||| |||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
8692312 |
aaaagttcgaccaaacaatattacttcacacaccatttcactcaattaacgcaaacaagcttctta |
8692377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 8678314 - 8678347
Alignment:
| Q |
308 |
tttctcttcttgcttagcgcaactcattgcacgt |
341 |
Q |
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| T |
8678314 |
tttctgttcttgcttagcgcaactcattgcacgt |
8678347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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