View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105-INSERTION-2 (Length: 483)
Name: NF0105-INSERTION-2
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105-INSERTION-2
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 8697018 - 8696751
Alignment:
Q
28
gatcaattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatg
127
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
8697018
gatcaattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatg
8696919
T
Q
128
ggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatc
227
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
T
8696918
ggaatttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatatattctacat-
8696820
T
Q
228
atggtaatataatgcatgcttaattagcacaataacaccgatgctaatatcagatttttgaccgactaactcttattaatttt
310
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
8696819
--------------catgcttaattagcacaataacaccgatgctaatatcagatttttgaccgactaactcttattaatttt
8696751
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 8677666 - 8677916
Alignment:
Q
32
aattaaactttaaaacgtgcaagacaaaaagtttgaccaacaatattacttcacacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaa
131
Q
||||| ||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
T
8677666
aattatactttaaaacgtgtaaaccataaagtttgaccaacaatattacttcatacaccacttcactcaaataagaaaaacaagcttcttaaaatgggaa
8677765
T
Q
132
tttactccaaatcagtattaataatttcttggtatcccatcaaggtgggcaatctttcttatggatctaatgaatatctattatacattctagatcatgg
231
Q
|||||||||||||||||| |||| |||| | ||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |||||| |||||||
T
8677766
tttactccaaatcagtataaatagtttcctcgtatctcatcaaggtggacaatctttaatatggatctaatgattatctattat--attctacatcatgg
8677863
T
Q
232
taat-------ataatgcatgcttaattagcacaataacaccgatgctaatat
277
Q
|| | |||||||||||||||||| ||||||||| | |||||||||||
T
8677864
tactataatgcataatgcatgcttaattaacacaataacgcggatgctaatat
8677916
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 312 - 483
Target Start/End: Complemental strand, 8696724 - 8696557
Alignment:
Q
312
tcttcttgcttagcgcaactcattgcacgtaataatggactttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagca
411
Q
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
T
8696724
tcttcttgcttagcgcaactcattgcacgtaataatggacttcaataaaagcaacatgg-aca--attacagcaaagaaaagaaacaaaatagctaagca
8696628
T
Q
412
taaattgtatgtgaggatttgaccca-aaaatttgcatgtgggaactctctatataagtaacaaaacccatta
483
Q
||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
T
8696627
taaattgtatgtggggatttgacccaaaaaatttgcatgtgggaa--ctctatataagtaacaaaacccatta
8696557
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 350 - 483
Target Start/End: Original strand, 8692561 - 8692693
Alignment:
Q
350
actttaataaacgcaacatgggacagtattacagcaaagaaaagaaacaaaatagctaagcataaattgtatgtgaggatttgaccc-aaaaatttgcat
448
Q
|||| |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||| ||||||
T
8692561
acttcaataaaagcaacatgggaca--attacagcaaagaaaagaaacaaaatagttaagcataaattgtatgtgggggtttgacccaaaaaacttgcat
8692658
T
Q
449
gtgggaactctctatataagtaacaaaacccatta
483
Q
||||||||||||||||||| |||||||||||||||
T
8692659
gtgggaactctctatataaataacaaaacccatta
8692693
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 8673612 - 8673655
Alignment:
Q
72
caatattacttcacacaccacttcactcaaataagaaaaacaag
115
Q
||||||||||||||||||||||||||||||||||| ||||||||
T
8673612
caatattacttcacacaccacttcactcaaataaggaaaacaag
8673655
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 8678379 - 8678446
Alignment:
Q
389
aaaagaaacaaaatagctaagcataaattgtatgtgaggatttgacccaaaaa--tttgcatgtgggaa
455
Q
|||||||||||||||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||
T
8678379
aaaagaaacaaaatagctaagcat-aattgcatgtggggatttgaccaaaaaaatattgcatgtgggaa
8678446
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 8692312 - 8692377
Alignment:
Q
58
aaaagtttgaccaa-caatattacttcacacaccacttcactcaaataagaaaaacaagcttctta
122
Q
||||||| |||||| |||||||||||||||||||| ||||||||| ||| ||||||||||||||
T
8692312
aaaagttcgaccaaacaatattacttcacacaccatttcactcaattaacgcaaacaagcttctta
8692377
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 8678314 - 8678347
Alignment:
Q
308
tttctcttcttgcttagcgcaactcattgcacgt
341
Q
||||| ||||||||||||||||||||||||||||
T
8678314
tttctgttcttgcttagcgcaactcattgcacgt
8678347
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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