View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105-INSERTION-3 (Length: 434)
Name: NF0105-INSERTION-3
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105-INSERTION-3 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 40441151 - 40441566
Alignment:
| Q |
7 |
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40441151 |
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaagatagaggaatggtgcacactggttggttacaacagca |
40441250 |
T |
|
| Q |
107 |
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgtta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
40441251 |
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgactgaagctatggtcaatgattgtcaacttgtgctgtta |
40441350 |
T |
|
| Q |
207 |
cctttcaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc |
306 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441351 |
cctttcaagggtgaccagttttttaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc |
40441450 |
T |
|
| Q |
307 |
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacatgaaatggaggaagtttat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40441451 |
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcctgggaagagcataagagaaaaccacatgaaatggaggaagtttat |
40441550 |
T |
|
| Q |
407 |
gttagataaagaaatt |
422 |
Q |
| |
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| T |
40441551 |
gttagataaagaaatt |
40441566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 40443576 - 40443989
Alignment:
| Q |
7 |
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagca |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
40443576 |
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaagatagaggaatggtgcacactggttggttacagcagca |
40443675 |
T |
|
| Q |
107 |
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgtta |
206 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
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| T |
40443676 |
gcttattctaaaacacaatagtgttggatgttatgtttgtcatggtggttttagttctgtgattgaagctatggttaatgattgtcaacttgtgctatta |
40443775 |
T |
|
| Q |
207 |
cctttcaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc |
306 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
40443776 |
ccttttaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaataggaaggaccaagatggatattttcata |
40443875 |
T |
|
| Q |
307 |
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacatgaaatggaggaagtttat |
406 |
Q |
| |
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|||| |||| ||||||||||||||| |||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40443876 |
aagaagatattttgaaggcagtgaaaactatcatggtgaatgatgagaaagagccggggaagagcataagagaaaaccacatgaaatggaggaagtttat |
40443975 |
T |
|
| Q |
407 |
gttagataaagaaa |
420 |
Q |
| |
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|||||||||||||| |
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| T |
40443976 |
gttagataaagaaa |
40443989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 21875838 - 21876118
Alignment:
| Q |
22 |
ctgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagcagcttattctaaaaca |
121 |
Q |
| |
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|||||||||| |||||||| ||||||||||| || |||||||||||| |||| ||||| ||||| | ||||||| | ||||| || ||| | | || || |
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| T |
21875838 |
ctgagttggagagagcattaccaaaagggttcttagaaagagtgaagaataggggaattgtgcatagtggttggctgcaacaacaacttgtattgaagca |
21875937 |
T |
|
| Q |
122 |
caatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgttacctttcaagggtgac |
221 |
Q |
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| |||||||| || ||||| ||||||| |||||||||||||||||| ||||| || || ||||||||||| | ||| || |||||||||||||||| |
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| T |
21875938 |
ctcaagtgttgggtgttatgtgtgtcatgctggttttagttctgtgatagaagctatagttaatgattgtcagttggtgttgctacctttcaagggtgat |
21876037 |
T |
|
| Q |
222 |
cagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatatttt |
302 |
Q |
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|||||||| |||||||| ||||||||| |||||||| |||| ||| | ||||||||||| || || |||||||||| |||| |
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| T |
21876038 |
cagtttttaaattctaaactcattgctgatgatttgaaggctggggtagaggtgaataggaaagatgaagatggatttttt |
21876118 |
T |
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