View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105-INSERTION-3 (Length: 434)
Name: NF0105-INSERTION-3
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105-INSERTION-3
Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Original strand, 40441151 - 40441566
Alignment:
Q
7
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagca
106
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
T
40441151
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaagatagaggaatggtgcacactggttggttacaacagca
40441250
T
Q
107
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgtta
206
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
T
40441251
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgactgaagctatggtcaatgattgtcaacttgtgctgtta
40441350
T
Q
207
cctttcaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc
306
Q
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
40441351
cctttcaagggtgaccagttttttaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc
40441450
T
Q
307
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacatgaaatggaggaagtttat
406
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
T
40441451
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcctgggaagagcataagagaaaaccacatgaaatggaggaagtttat
40441550
T
Q
407
gttagataaagaaatt
422
Q
||||||||||||||||
T
40441551
gttagataaagaaatt
40441566
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 420
Target Start/End: Original strand, 40443576 - 40443989
Alignment:
Q
7
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagca
106
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
T
40443576
atctttgtgcaaaaactgagttggaaagagcattgccaaaagggtttttggaaagagtgaaagatagaggaatggtgcacactggttggttacagcagca
40443675
T
Q
107
gcttattctaaaacacaatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgtta
206
Q
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
T
40443676
gcttattctaaaacacaatagtgttggatgttatgtttgtcatggtggttttagttctgtgattgaagctatggttaatgattgtcaacttgtgctatta
40443775
T
Q
207
cctttcaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatattttcatc
306
Q
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
T
40443776
ccttttaagggtgaccagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaataggaaggaccaagatggatattttcata
40443875
T
Q
307
aagagagtattctgaaggcagtgaaaatcatcatgatggatggtgagaaagagcttgggaagagcataagagaaaaccacatgaaatggaggaagtttat
406
Q
|||| |||| ||||||||||||||| |||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
T
40443876
aagaagatattttgaaggcagtgaaaactatcatggtgaatgatgagaaagagccggggaagagcataagagaaaaccacatgaaatggaggaagtttat
40443975
T
Q
407
gttagataaagaaa
420
Q
||||||||||||||
T
40443976
gttagataaagaaa
40443989
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 21875838 - 21876118
Alignment:
Q
22
ctgagttggaaagagcattgccaaaagggtttttggaaagagtgaaggatagaggaatggtgcacactggttggttacaacagcagcttattctaaaaca
121
Q
|||||||||| |||||||| ||||||||||| || |||||||||||| |||| ||||| ||||| | ||||||| | ||||| || ||| | | || ||
T
21875838
ctgagttggagagagcattaccaaaagggttcttagaaagagtgaagaataggggaattgtgcatagtggttggctgcaacaacaacttgtattgaagca
21875937
T
Q
122
caatagtgttggatgctatgtttgtcatggtggttttagttctgtgattgaagcaatggtcaatgattgtcaacttgtgctgttacctttcaagggtgac
221
Q
| |||||||| || ||||| ||||||| |||||||||||||||||| ||||| || || ||||||||||| | ||| || ||||||||||||||||
T
21875938
ctcaagtgttgggtgttatgtgtgtcatgctggttttagttctgtgatagaagctatagttaatgattgtcagttggtgttgctacctttcaagggtgat
21876037
T
Q
222
cagtttttcaattctaagctcattgctaatgatttggaggcagggattgaggtgaatagaaaggaagaagatggatatttt
302
Q
|||||||| |||||||| ||||||||| |||||||| |||| ||| | ||||||||||| || || |||||||||| ||||
T
21876038
cagtttttaaattctaaactcattgctgatgatttgaaggctggggtagaggtgaataggaaagatgaagatggatttttt
21876118
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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