View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105-INSERTION-4 (Length: 504)
Name: NF0105-INSERTION-4
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105-INSERTION-4 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 5 - 372
Target Start/End: Original strand, 3480178 - 3480548
Alignment:
| Q |
5 |
acaacaatatgattaagctctgtaaaccttatgacatgatgaattgatgatagatcattgtgttcagtttcaaatgttttctgccgttttctgaaagctt |
104 |
Q |
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| T |
3480178 |
acaacaatatgattaagctctgtaaaccttacgacatgatgaattgatgatagatcattgtgttcagtttcaaatgttttctgccgttttctgaaagctt |
3480277 |
T |
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| Q |
105 |
acaaatcgaccaacagatgcaattatatatagttggtttcttaaacttgagagtctgcacaaacaagtagagcttttgtagccttgacatgtttaccaaa |
204 |
Q |
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| T |
3480278 |
acaaatcgaccaacagatgcaattatatatagttggtttcttaaacttgagagtctgcacaaacaagtagagcttttgtagccttgacatgtttaccaaa |
3480377 |
T |
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| Q |
205 |
aataaa---aatattaaaagaacttatatgtggcatgagcagcattacagggacaagtttgtgcattgcagatgtttcatgggtgtatggataactagac |
301 |
Q |
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| T |
3480378 |
aataaaaataatattaaaagaacttatatgtggcatgagcagcattacagagacaagtttgtgcattgcagatgtttcatgggtgtatggataactagac |
3480477 |
T |
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| Q |
302 |
agtaagcgtctaccggaggtcattggacaatcgccaaaaaggaatgaacaagaaatcaggtatttggtggt |
372 |
Q |
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| T |
3480478 |
agtaagcgtctaccggaggtcactggacaatcgccaaaaaggaatgaacaagaaatcaggtatttggtggt |
3480548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 372 - 504
Target Start/End: Original strand, 3480592 - 3480724
Alignment:
| Q |
372 |
tcggaagacctattttctgaatcgtgatcttgttatgcattgtaaaaacaaatgacatgtatgcaaaaacatttagaaaccaagtcacacaactaggtct |
471 |
Q |
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| T |
3480592 |
tcggaagacctattttctgaatcgtgatcttgttatgcattgtaaaaacaaatgacatgtatgcaaaaacatttagaaaccaagtcacacaactaggtct |
3480691 |
T |
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| Q |
472 |
gtctctgggatgtacccatgtacatgactgaat |
504 |
Q |
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| T |
3480692 |
gtatctgggatgtacccatgaacatgactgaat |
3480724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 3536491 - 3536422
Alignment:
| Q |
147 |
aaacttgagagtctgcacaaacaagtagagcttttgtagccttgacatgtttaccaaaaataaaaatatt |
216 |
Q |
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| T |
3536491 |
aaactcgagagtctgcgcaaactagtacagcttttgcagactcgacatgtttaccaaatataaaagtatt |
3536422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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