View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0105-INSERTION-5 (Length: 339)

Name: NF0105-INSERTION-5
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0105-INSERTION-5
NF0105-INSERTION-5
[»] chr1 (4 HSPs)
chr1 (9-196)||(12185905-12186090)
chr1 (193-322)||(12185765-12185894)
chr1 (205-268)||(12191315-12191378)
chr1 (7-46)||(12191438-12191477)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 12185905 - 12186090
Alignment:
Q  9 tacaatggtgttctgcaaccaataattgggtcatcaacaaaaaactttctgttccatttcannnnnnnggtttccccccaaataaatcaaacatgtgata 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       ||||  ||||||||||||||||||||||||||    
T  12185905 tacaatggtgttttgcaaccaataattgggtcatcaacaaaaaactttctgttccatttcatttttttggtt--cccccaaataaatcaaacatgtgata 12186002  T
Q  109 tgttattgcaagttataatttgcagtgttaaaggttgagtcctaggtcgttataagtctagggagctttcatgtctgaagagtgaatt 196  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12186003 tgttattgcaagttataatttgcagtgttaaaggttgattcctaggtcgttataagtctagggagcttttatgtctgaagagtgaatt 12186090  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 12185765 - 12185894
Alignment:
Q  193 aattggctccgattgccattgatatttctttatggcgggcagccacaccttccaacaacgcatcaatttccacaatataatgactgcatgttcattgcgc 292  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12185765 aattggccccgattgccattgatatttctttatggcgggcagcaacaccttccaacaacgcatcaatttccacaatataatgactgcatgttcattgcgc 12185864  T
Q  293 cgatattgggaaaaacaggctgaacccaat 322  Q
    | |||||| |||||||||||||||||||||    
T  12185865 caatattgcgaaaaacaggctgaacccaat 12185894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 12191315 - 12191378
Alignment:
Q  205 ttgccattgatatttctttatggcgggcagccacaccttccaacaacgcatcaatttccacaat 268  Q
    ||||||||||| ||||||||||||||||||  || ||||||||||| |||||||||||||||||    
T  12191315 ttgccattgatctttctttatggcgggcagagacgccttccaacaatgcatcaatttccacaat 12191378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 12191438 - 12191477
Alignment:
Q  7 actacaatggtgttctgcaaccaataattgggtcatcaac 46  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  12191438 actacaatggtgttctgcaaccaataactggatcatcaac 12191477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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