View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105-INSERTION-6 (Length: 180)
Name: NF0105-INSERTION-6
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105-INSERTION-6
[» ] chr5 (7 HSPs)
Alignment Details
Target: chr5 (Bit Score: 117; Significance: 7e-60; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 7e-60
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37704571 - 37704455
Alignment:
Q
64
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa
163
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
37704571
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa
37704472
T
Q
164
taagtcaacctttttgg
180
Q
|||||||||||||||||
T
37704471
taagtcaacctttttgg
37704455
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37699092 - 37698974
Alignment:
Q
64
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatct
161
Q
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||||
T
37699092
aattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatct
37698993
T
Q
162
aataagtcaacctttttgg
180
Q
||||| |||| ||||||||
T
37698992
aataactcaaactttttgg
37698974
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37704459 - 37704400
Alignment:
Q
8
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatcaatt
67
Q
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
T
37704459
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaatt
37704400
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37437636 - 37437521
Alignment:
Q
64
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa
163
Q
|||||||||||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||
T
37437636
aattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaa
37437538
T
Q
164
taagtcaacctttttgg
180
Q
||||||| ||||||||
T
37437537
taagtcagactttttgg
37437521
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 37437525 - 37437469
Alignment:
Q
8
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatca
64
Q
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
T
37437525
tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatca
37437469
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 37698697 - 37698637
Alignment:
Q
120
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg
180
Q
|||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||
T
37698697
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg
37698637
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37698641 - 37698582
Alignment:
Q
8
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatcaatt
67
Q
|||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||
T
37698641
tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaatt
37698582
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 16841203 - 16841235
Alignment:
Q
22
cttagtttcaggttatgtttcctatataaatag
54
Q
|||||||||||||||||||||||||||||||||
T
16841203
cttagtttcaggttatgtttcctatataaatag
16841235
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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