View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105-INSERTION-6 (Length: 180)
Name: NF0105-INSERTION-6
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105-INSERTION-6 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 7e-60; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 7e-60
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37704571 - 37704455
Alignment:
| Q |
64 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa |
163 |
Q |
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| T |
37704571 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa |
37704472 |
T |
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| Q |
164 |
taagtcaacctttttgg |
180 |
Q |
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| T |
37704471 |
taagtcaacctttttgg |
37704455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37699092 - 37698974
Alignment:
| Q |
64 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaa--tttgcaaacaatct |
161 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |||| ||||||||| |
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| T |
37699092 |
aattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaataagggaatacctagactcaatgtttgtaaacaatct |
37698993 |
T |
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| Q |
162 |
aataagtcaacctttttgg |
180 |
Q |
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| T |
37698992 |
aataactcaaactttttgg |
37698974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37704459 - 37704400
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatcaatt |
67 |
Q |
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| T |
37704459 |
tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaatt |
37704400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 37437636 - 37437521
Alignment:
| Q |
64 |
aattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaa |
163 |
Q |
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|||||||||||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| ||||||||||| |
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| T |
37437636 |
aattaatattgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaa |
37437538 |
T |
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| Q |
164 |
taagtcaacctttttgg |
180 |
Q |
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| T |
37437537 |
taagtcagactttttgg |
37437521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 37437525 - 37437469
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatca |
64 |
Q |
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| T |
37437525 |
tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatca |
37437469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 37698697 - 37698637
Alignment:
| Q |
120 |
aacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttgg |
180 |
Q |
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| T |
37698697 |
aacaaaataagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttgg |
37698637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 37698641 - 37698582
Alignment:
| Q |
8 |
tttggtccttgccccttagtttcaggttatgtttcctatataaataggggctaatcaatt |
67 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37698641 |
tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaatt |
37698582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 16841203 - 16841235
Alignment:
| Q |
22 |
cttagtttcaggttatgtttcctatataaatag |
54 |
Q |
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| T |
16841203 |
cttagtttcaggttatgtttcctatataaatag |
16841235 |
T |
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