View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105-INSERTION-9 (Length: 93)
Name: NF0105-INSERTION-9
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105-INSERTION-9
[» ] chr1 (1 HSPs)
Alignment Details
Target: chr1 (Bit Score: 93; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 7e-46
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3307794 - 3307886
Alignment:
Q
1
gagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgt
93
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3307794
gagtatggaacctggaggcttaagggtcatgatgagcaatgatgttacttttgatgagacttgtatgaggatgaagtacaaagacttgtatgt
3307886
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 17934541 - 17934585
Alignment:
Q
41
gatgttacttttgatgagacttgtatgaggatgaagtacaaagac
85
Q
|||||||||||||||||||| ||||| ||||||||| |||||||
T
17934541
gatgttacttttgatgagacccgtatggggatgaagtgcaaagac
17934585
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 28; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 22623703 - 22623656
Alignment:
Q
41
gatgttacttttgatgagacttgtatgaggatgaagtacaaagacttg
88
Q
|||||||||||||||||||| | ||| ||||||||| ||||||||||
T
22623703
gatgttacttttgatgagacccgaatggggatgaagtgcaaagacttg
22623656
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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