View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105_high_1 (Length: 478)
Name: NF0105_high_1
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 30 - 470
Target Start/End: Complemental strand, 43537947 - 43537486
Alignment:
| Q |
30 |
aaaaccagctaatatggtttcata----gtgtgattatttgacaacaaaaatctatttcacatacgatgtgtccaaagtcttacaattgcatggaaaatg |
125 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43537947 |
aaaaccagctaatatggtttcatatatagtgtgattatttgacaacaaaaatctatttcacatacgatgtgtccaaagtcttacaattgcatggaaaatg |
43537848 |
T |
|
| Q |
126 |
aaaaacaccataagttcctaacacgtgtacggtaaataatggctgggtcaagcatgcattgatggaaggtcaattatcata---------catgtaatta |
216 |
Q |
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| T |
43537847 |
aaaaacaccataagttcctaacacgtgtacggtaaataatggctgggtcaagcatgcattgatggaaggtcaattatcatacatgatatacatgtaatta |
43537748 |
T |
|
| Q |
217 |
catctttcatgtcgcaagttcagtacttatcacaaagacgtgctcaattatatgagtagacaaaaccacaacataacataat--------tatatatatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43537747 |
catctttcatgtcgcaagttcagtacttatcacaaagacgtgctcaattatatgagtagacaaaaccacaacataacataattatatatatatatatata |
43537648 |
T |
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| Q |
309 |
ggacccaactagaagggtattttggtagttgtatccataaagctctaatctcttaactggcctttatatagagttttgctccacatgattgttatatatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43537647 |
ggacccaactagaagggtattttggtagttgtatccataaagctctaacctcttaactggcctttatatagagttttgctccacatgattgttatagatc |
43537548 |
T |
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| Q |
409 |
cattccattttcatataatcccgcgattttcttctcaagcaatcctgtctcctgtctctgct |
470 |
Q |
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| T |
43537547 |
cattccattttcatataatcccgcgattttcttctcaagcaatactgtctcctgtttctgct |
43537486 |
T |
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