View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0105_high_3 (Length: 320)

Name: NF0105_high_3
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0105_high_3
NF0105_high_3
[»] chr7 (1 HSPs)
chr7 (80-205)||(46891906-46892030)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 46891906 - 46892030
Alignment:
Q  80 acttctcccccaaacccaaaaaagaggttaatggaaaaccccattggcagaatccttgaacattggctagtctaccatccaaacattctaaatttcacat 179  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46891906 acttctcccccaaacccaaaaa-gaggtgaatggaaaaccccattggcagaatccttgaacattggctagtctaccatccaaacattctaaatttcacat 46892004  T
Q  180 ggaaccctcctcacactccagcctca 205  Q
    ||||||||||||||||||||||||||    
T  46892005 ggaaccctcctcacactccagcctca 46892030  T

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