View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105_high_6 (Length: 288)
Name: NF0105_high_6
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105_high_6
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 32216407 - 32216661
Alignment:
Q
1
caattgaattttgggaaatcctacatggttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa
100
Q
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32216407
caattgaattttgggaaatcctacatagttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa
32216506
T
Q
101
atgactttgcagattcttcaaattcaaacatcatgccgactcgtgctttcctatttccattaccatctttatcattcacttgtctttcagccgagtttat
200
Q
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
T
32216507
atgactttgcagattcttcagattcaaacatcatgccgactcgtgctttcctatttacattaccatctttatcattcacttgtctttcaaccgagtttgc
32216606
T
Q
201
agtcatacttcgttccttgcctttcttagtttcatcattttctaaaacaggttta
255
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32216607
agtcatacttcgttccttgcctttcttagtttcatcattttctaaaacaggttta
32216661
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 32216395 - 32216177
Alignment:
Q
37
ataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgc
136
Q
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
T
32216395
ataacacagttgaattgacaaacgtacatgctaaatcctacatgtcttgcatatgcaccataaaatgactttgcagattcttcagattcaaacatcatgc
32216296
T
Q
137
cgactcgtgctttcctatttccattaccatctttatcattcacttgtctttcagccgagtttatagtcatacttcgttccttgcctttcttagtttcatc
236
Q
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
32216295
caactcgtggtttcctatttccattaccatctttatcattcacttgtctttcagccgagtttatagtcatacttcgttccttgcctttcttagtttcatc
32216196
T
Q
237
attttctaaaacaggttta
255
Q
||||||||||||| |||||
T
32216195
attttctaaaacatgttta
32216177
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 16837441 - 16837574
Alignment:
Q
44
ggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgccgactcg
143
Q
||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||| ||||||||||||||
T
16837441
ggttgaattgacaaaagccgatgctaaatcctacatgtcttgcatatgcactataaaatgacactgcagattctttagattcaaagatcatgccgactcg
16837540
T
Q
144
tgctttcctatttccattaccatctttatcattc
177
Q
|| |||||||||||||||||||||||||||||||
T
16837541
tggtttcctatttccattaccatctttatcattc
16837574
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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