View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105_high_7 (Length: 276)
Name: NF0105_high_7
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105_high_7
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 36121131 - 36120891
Alignment:
Q
30
aagaatactcctttatgcgacgttggcaataaagaatcatttcatcccttggtggcaaacactccttgatgataggatggctcagaaagttgatcttcca
129
Q
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
36121131
aagaatactcctttatgcgacggtggcaataaagaatcatttcatcccttggtggcaaacactccttgatgataggatggctcagaaagttgatcttcca
36121032
T
Q
130
tgaagagatggaaggacattttaatgggtcaagtatctgcgttgacccaatttcttcccaaattggaagaaaacaagtgatccatccaagagcaagatca
229
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
T
36121031
tgaagagatggaaggacattttaatgggtcaagtatctgcgttgacccaatttcttcccaaattggaagaaaacaagtgatccatccaagagtaagatca
36120932
T
Q
230
aggtacccaatagtgtccccacctaagaatttcttcccctt
270
Q
||||||||||||||||||||||| |||||||||||||||||
T
36120931
aggtacccaatagtgtccccaccaaagaatttcttcccctt
36120891
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 36134599 - 36134532
Alignment:
Q
209
atccatccaagagcaagatcaaggtacccaatagtgtccccacctaagaatttcttccccttcatctc
276
Q
||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| |||||
T
36134599
atccatccaagagcaagatcaaggtacccaatattgtcccctccaaagaatttcttcccctttatctc
36134532
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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