View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0105_high_7 (Length: 276)
Name: NF0105_high_7
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 270
Target Start/End: Complemental strand, 36121131 - 36120891
Alignment:
| Q |
30 |
aagaatactcctttatgcgacgttggcaataaagaatcatttcatcccttggtggcaaacactccttgatgataggatggctcagaaagttgatcttcca |
129 |
Q |
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| T |
36121131 |
aagaatactcctttatgcgacggtggcaataaagaatcatttcatcccttggtggcaaacactccttgatgataggatggctcagaaagttgatcttcca |
36121032 |
T |
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| Q |
130 |
tgaagagatggaaggacattttaatgggtcaagtatctgcgttgacccaatttcttcccaaattggaagaaaacaagtgatccatccaagagcaagatca |
229 |
Q |
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| T |
36121031 |
tgaagagatggaaggacattttaatgggtcaagtatctgcgttgacccaatttcttcccaaattggaagaaaacaagtgatccatccaagagtaagatca |
36120932 |
T |
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| Q |
230 |
aggtacccaatagtgtccccacctaagaatttcttcccctt |
270 |
Q |
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| T |
36120931 |
aggtacccaatagtgtccccaccaaagaatttcttcccctt |
36120891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 209 - 276
Target Start/End: Complemental strand, 36134599 - 36134532
Alignment:
| Q |
209 |
atccatccaagagcaagatcaaggtacccaatagtgtccccacctaagaatttcttccccttcatctc |
276 |
Q |
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| T |
36134599 |
atccatccaagagcaagatcaaggtacccaatattgtcccctccaaagaatttcttcccctttatctc |
36134532 |
T |
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