View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105_low_10 (Length: 257)
Name: NF0105_low_10
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105_low_10
[» ] chr5 (8 HSPs)
[» ] chr8 (1 HSPs)
[» ] chr3 (4 HSPs)
[» ] chr7 (7 HSPs)
[» ] chr4 (3 HSPs)
[» ] scaffold0065 (2 HSPs)
[» ] scaffold1364 (1 HSPs)
[» ] scaffold0160 (1 HSPs)
[» ] scaffold0002 (1 HSPs)
[» ] scaffold0178 (1 HSPs)
Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 32699091 - 32698856
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
T
32699091
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtagggtggaccacatgatcat
32698992
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
T
32698991
aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt
32698892
T
Q
222
gtatcctctaaataaaagattaaaatttatttttca
257
Q
|||||||||||||||| ||||||||||||||||||
T
32698891
ttatcctctaaataaaatattaaaatttatttttca
32698856
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 43323481 - 43323714
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
T
43323481
acaaaatagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtagggtggaccacatgatcat
43323580
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
43323581
aagtgtgtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttattttt
43323680
T
Q
222
gtatcctctaaataaaagattaaaatttattttt
255
Q
|||||||||||||||||||||||||||||||||
T
43323681
ttatcctctaaataaaagattaaaatttattttt
43323714
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 21491789 - 21491858
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac
91
Q
|||||||||| | ||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||
T
21491789
acaaagtagattaaaattttagcaccaaagaaatagagactaaaattttagcacttgtgaataatagcac
21491858
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 13820758 - 13820826
Alignment:
Q
147
tatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattt
215
Q
||||||||| || | || |||| ||||||||||| |||||||||||||| || |||||| |||||||||
T
13820758
tatcaaattcaattatgcaatccttttaatcaatttaagaaagttgacattactatattgatataattt
13820826
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 43171274 - 43171370
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| |||||||| | ||||||||||||| | || |||| ||| |||||| ||||||||||||| || |||||| || ||||||||||||
T
43171274
tgtgtctcgcatgatcttgcattatcaaatttaactatgcaatcatttcgatcaattaaagaaagttgacattactatattgatgtaatttattttt
43171370
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5120487 - 5120551
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataat
86
Q
||||||||||||||||||||| || ||| ||||| | ||| ||||||||| |||| ||||||||
T
5120487
acaaagtagactgaaattttaacacctgaaaaatagaaactgaaattttagcacttaagaataat
5120551
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 13826095 - 13826179
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattt
219
Q
|||||||| | |||||||||| || | || |||| ||| |||||| ||||||||||||| || |||||| |||||||||||||
T
13826095
atgatcttgcattatcaaattcaattatgaaatcctttcgatcaattcaagaaagttgacattactatattgatataatttattt
13826179
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 29789791 - 29789683
Alignment:
Q
113
catgatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataa
212
Q
||||||||| | |||||||| |||||||||| |||||| ||| || | || || | | ||||||||| | |||||||||| || |||||| ||||||
T
29789791
catgatcatgaatgtgtctcgcatgatcttacattatcatattcaattgtgcaaccctcttaatcaattcatgaaagttgacgttactatattgatataa
29789692
T
Q
213
tttattttt
221
Q
|||||||||
T
29789691
tttattttt
29789683
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 12700564 - 12700329
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |||||||||||||||||
T
12700564
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagaacaaaaaaaagtaaagtggaccacatgatcat
12700465
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
T
12700464
aagtgtgtctcatatgatcttactttatcaaatttaaatctataatcttttcaatcaatctaagaaacttgacactattatattaatataatttattttt
12700365
T
Q
222
gtatcctctaaataaaagattaaaatttatttttca
257
Q
|||||||||||||||||||||||||||||||||||
T
12700364
ttatcctctaaataaaagattaaaatttatttttca
12700329
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 33443885 - 33443650
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||
T
33443885
acaaaatagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtaaggtggaccacatgatcat
33443786
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
T
33443785
aagtgtgtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttattttt
33443686
T
Q
222
gtatcctctaaataaaagattaaaatttatttttca
257
Q
|||||||||||||||||||||||||||||||||||
T
33443685
ttatcctctaaataaaagattaaaatttatttttca
33443650
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 9467237 - 9467466
Alignment:
Q
28
tagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcataagtgt
127
Q
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||
T
9467237
tagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagttaggtggaccacatgatcataaatgt
9467336
T
Q
128
gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtatcc
227
Q
|||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
9467337
gtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttatttttttatcc
9467436
T
Q
228
tctaaataaaagattaaaatttatttttca
257
Q
||||||||||||||||||||||||||||||
T
9467437
tctaaataaaagattaaaatttatttttca
9467466
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 46947613 - 46947513
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattta--tttttgtatcctctaa
232
Q
|||||||| | |||||||||| || | || |||||||| |||||| |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||
T
46947613
atgatcttgcattatcaaattcaattatgcaatcttttcaatcaaactaagaaagttgccactactatattaatataatttaattttttggatcctctaa
46947514
T
Q
233
a
233
Q
|
T
46947513
a
46947513
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 12893273 - 12893189
Alignment:
Q
137
gatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||| | |||||||||| || | || |||| ||||||||||| ||||||||||||| || ||| || |||||||||||||||
T
12893273
gatcttgcattatcaaattcaattatgcaatccttttaatcaattcaagaaagttgacattactatgttgatataatttattttt
12893189
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 10015503 - 10015738
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
T
10015503
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgaaaataatagcacaaaaaaaagtagggtggaccacatgatcat
10015602
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
T
10015603
aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt
10015702
T
Q
222
gtatcctctaaataaaagattaaaatttatttttca
257
Q
|||||||||||||||| |||||||||||||||||
T
10015703
ttatcctctaaataaaattttaaaatttatttttca
10015738
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 37548550 - 37548779
Alignment:
Q
28
tagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcataagtgt
127
Q
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||||||||||| |||
T
37548550
tagactgaaattttagcatttgagaaatatagactaaaattttagcacttgataataatagcacaaaaaaaagtttggtggaccacatgatcataattgt
37548649
T
Q
128
gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtatcc
227
Q
|||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
T
37548650
gtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttatttttttatcc
37548749
T
Q
228
tctaaataaaagattaaaatttatttttca
257
Q
||||||||||||||||||||||||||||||
T
37548750
tctaaataaaagattaaaatttatttttca
37548779
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 36628810 - 36628562
Alignment:
Q
23
caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtag-------------ggtgga
109
Q
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||
T
36628810
caaagtagacttaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtaaacaaaaaaagtatggtgga
36628711
T
Q
110
ccacatgatcataagtgtgtctc----atatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatatt
205
Q
||||||||||||||||||||| | |||||||||| | |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
T
36628710
ccacatgatcataagtgtgtcactattatatgatcttgcattatcaaattcaattctgcaatctttttaatcaatctaagaaagttgacactattatatt
36628611
T
Q
206
aatataatttat-ttttgtatcctctaaataaaagattaaaatttattt
253
Q
|||||||||||| |||| |||||||| ||||||||||||||||| ||||
T
36628610
aatataatttattttttttatcctctgaataaaagattaaaattgattt
36628562
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 15995362 - 15995296
Alignment:
Q
25
aagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac
91
Q
|||||| ||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||||||||
T
15995362
aagtaggctgaaattttagcatctgaaaaataaagactaaaattttagcacctgagaataatagcac
15995296
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 9420679 - 9420593
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| | |||| ||||| || |||| |||||||||||||||| ||||||||||||| || || ||| |||||||||||||||
T
9420679
atgatcttgcattattaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactacattgatataatttattttt
9420593
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 8113785 - 8113881
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| |||||||| | |||||||||| || | || |||| ||| ||||||| ||||| |||||| || ||||||||| ||||||||||||
T
8113785
tgtgtctcgcatgatcttccattatcaaattcaactatgcaatcctttcaatcaattcgagaaaattgacattactatattaatgtaatttattttt
8113881
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 21863832 - 21863736
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| |||||||| |||||||||| || | || |||| ||| ||||||| || |||||||||| || | ||||||||||||||||||||
T
21863832
tgtgtctcgcatgatcttggattatcaaattcaattttgcaatcatttcaatcaattcaaaaaagttgacattactttattaatataatttattttt
21863736
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 56366645 - 56366880
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat
121
Q
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
T
56366645
acaaagtagactgaaattttagcatttgagaaatatagattaaaattttagcacttgaaaataatagcacaaaaaaaagtagggtggaccacatgatcat
56366744
T
Q
122
aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
T
56366745
aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt
56366844
T
Q
222
gtatcctctaaataaaagattaaaatttatttttca
257
Q
|||||||||||||||| |||||||||||||||||
T
56366845
ttatcctctaaataaaattttaaaatttatttttca
56366880
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 24611221 - 24611317
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
||||| ||| |||||||| | |||||||||| || |||| |||| || ||||||| ||||||||||||| || |||||||||| |||||||||||
T
24611221
tgtgtgtcacatgatcttccattatcaaattcaattctgcaatcccttcaatcaattcaagaaagttgacaatactatattaataaaatttattttt
24611317
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 3665318 - 3665404
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| | |||||||||| || | || |||| ||| ||||||| ||||||||||||| || |||||| |||||||||||||||
T
3665318
atgatcttgcattatcaaattcaattttgcaatcctttcaatcaattcaagaaagttgacattactatattgatataatttattttt
3665404
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 66566 - 66435
Alignment:
Q
126
gtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtat
225
Q
||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |||
T
66566
gtgtctcatataatcttactttatcaaatttaaatctataatcttttcaatcaatgtaagaaagttgacactattatattaatataaattatttttttat
66467
T
Q
226
cctctaaataaaagattaaaatttatttttca
257
Q
||||||||||||||||||||||||| ||||||
T
66466
cctctaaataaaagattaaaatttagttttca
66435
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 66649 - 66580
Alignment:
Q
22
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac
91
Q
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
66649
acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcac
66580
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 4090644 - 4090793
Alignment:
Q
104
ggtggaccacatgatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattata
203
Q
||||||| |||||||||||||||| |||||||||||||| | ||||| |||| || ||| |||||||| ||||||| ||||||||||||||||||||||
T
4090644
ggtggactacatgatcataagtgtatctcatatgatcttgcattatctaattcaattctacaatcttttcaatcaatttaagaaagttgacactattata
4090743
T
Q
204
ttaatataatttatttttgtatcctctaaataaaagattaaaatttattt
253
Q
|||||||||||||||||| |||||||||||||||||||| ||||| ||||
T
4090744
ttaatataatttatttttttatcctctaaataaaagatttaaattgattt
4090793
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 4090544 - 4090611
Alignment:
Q
23
caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac
91
Q
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
T
4090544
caaagtagactgaaattttagcatttgagaaatata-actaaaattttagcacttgagaataatagcac
4090611
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 4065469 - 4065555
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| | |||||||||| || | || ||| ||| |||||||| | ||||||||||| |||| ||||||||||||||||||||
T
4065469
atgatcttgcattatcaaattcaattatgcaatgctttcaatcaatccatgaaagttgacattattgtattaatataatttattttt
4065555
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 11680737 - 11680821
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattt
219
Q
|||||||| | |||||||||| || | || |||| ||| ||||||| ||||||||||||| ||||||||| || | ||||||||
T
11680737
atgatcttgcattatcaaattcaactatgcaatcctttcaatcaattcaagaaagttgacattattatattgatgtgatttattt
11680821
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 38422799 - 38422937
Alignment:
Q
116
gatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattt
215
Q
|||||| | ||||||||| |||||||| | |||||||||| || ||| ||| ||| |||||||| |||||| ||||||||| |||||| |||||||||
T
38422799
gatcatgaatgtgtctcacatgatcttgcattatcaaattcaattctacgatcctttcaatcaatccaagaaaattgacactactatattgatataattt
38422898
T
Q
216
a-tttttgtatcctctaaataaaagattaaaatttattt
253
Q
| |||||| |||||||||| |||||||| | ||||||||
T
38422899
attttttggatcctctaaagaaaagattgagatttattt
38422937
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 9913325 - 9913257
Alignment:
Q
23
caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac
91
Q
||||||| |||||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||
T
9913325
caaagtaaactgaaattttagcatctcatagatatagactaaaattttagcacttgagaataatagcac
9913257
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 43673148 - 43673275
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgta
224
Q
||||||| | |||||||| | |||||||||| || | ||||||||||| | |||| | ||||||||||||||||||||||| || |||||| ||||| |
T
43673148
tgtgtcttacatgatcttgcattatcaaattcaattttgtaatcttttcagtcaacccaagaaagttgacactattatattcatttaattt-tttttcga
43673246
T
Q
225
tcctctaaataaaagattaaaatttattt
253
Q
|||||||| ||||||||| ||| ||||
T
43673247
ccctctaaaggaaagattaagattgattt
43673275
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 9425130 - 9425201
Alignment:
Q
184
agaaagttgacactattatattaatataattta--tttttgtatcctctaaataaaagattaaaatttattt
253
Q
|||||||||||| || ||||||||||| ||||| |||||| |||||||||| ||||||||| ||| ||||
T
9425130
agaaagttgacattactatattaatattatttatttttttggatcctctaaagtaaagattaagattgattt
9425201
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 14904258 - 14904162
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| |||||||| | |||||||||| || || |||| ||| ||||||| ||||||||||||| || |||||| || ||||||||||||
T
14904258
tgtgtctcgcatgatcttgcattatcaaattcaaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatttattttt
14904162
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 25621672 - 25621576
Alignment:
Q
125
tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| |||||||| | |||||||||| || | || ||| ||| ||||||| ||||||||||||| || ||| || |||||||||||||||
T
25621672
tgtgtctcgcatgatcttgcattatcaaattcaactatgcaattctttcaatcaattcaagaaagttgacattactatttttatataatttattttt
25621576
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 5509728 - 5509816
Alignment:
Q
128
gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattta
216
Q
|||||| |||||||| | |||||||||| || |||| |||||||||||||||| ||||||||||||| || |||||| ||||||||||
T
5509728
gtctcacatgatcttgcattatcaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactatattgatataattta
5509816
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1364 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1364
Description:
Target: scaffold1364; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 1061 - 986
Alignment:
Q
146
ttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||||| |||| || |||| ||| ||||||| |||||| |||||| || |||||| |||||||||||||||
T
1061
ttatcaaattcaaatttgcaatcatttcaatcaattcaagaaatttgacattactatattgatataatttattttt
986
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 25338 - 25256
Alignment:
Q
139
tcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||| |||||||||||| || | || |||| ||| ||||| | ||||||||||||| || |||||| |||||||||||||||
T
25338
tcttgctttatcaaattcaattatgcaatcctttcaatcatttcaagaaagttgacattaatatattgatataatttattttt
25256
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 98230 - 98316
Alignment:
Q
135
atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt
221
Q
|||||||| | |||||||||| |||| || |||| ||| |||||| |||||| |||||| || |||||| |||||||||||||||
T
98230
atgatcttgcattatcaaattcaaatttgcaatcctttcgatcaattcaagaaatttgacattaatatattgatataatttattttt
98316
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 1159 - 1207
Alignment:
Q
174
aatcaatctaagaaagttgacactattatattaatataatttatttttg
222
Q
||||||| ||||||||||||| || ||||||||| |||||||||||||
T
1159
aatcaattcaagaaagttgacattactatattaatgtaatttatttttg
1207
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
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