View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0105_low_10 (Length: 257)

Name: NF0105_low_10
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0105_low_10
NF0105_low_10
[»] chr5 (8 HSPs)
chr5 (22-257)||(32698856-32699091)
chr5 (22-255)||(43323481-43323714)
chr5 (22-91)||(21491789-21491858)
chr5 (147-215)||(13820758-13820826)
chr5 (125-221)||(43171274-43171370)
chr5 (22-86)||(5120487-5120551)
chr5 (135-219)||(13826095-13826179)
chr5 (113-221)||(29789683-29789791)
[»] chr8 (1 HSPs)
chr8 (22-257)||(12700329-12700564)
[»] chr3 (4 HSPs)
chr3 (22-257)||(33443650-33443885)
chr3 (28-257)||(9467237-9467466)
chr3 (135-233)||(46947513-46947613)
chr3 (137-221)||(12893189-12893273)
[»] chr7 (7 HSPs)
chr7 (22-257)||(10015503-10015738)
chr7 (28-257)||(37548550-37548779)
chr7 (23-253)||(36628562-36628810)
chr7 (25-91)||(15995296-15995362)
chr7 (135-221)||(9420593-9420679)
chr7 (125-221)||(8113785-8113881)
chr7 (125-221)||(21863736-21863832)
[»] chr4 (3 HSPs)
chr4 (22-257)||(56366645-56366880)
chr4 (125-221)||(24611221-24611317)
chr4 (135-221)||(3665318-3665404)
[»] scaffold0065 (2 HSPs)
scaffold0065 (126-257)||(66435-66566)
scaffold0065 (22-91)||(66580-66649)
[»] chr6 (4 HSPs)
chr6 (104-253)||(4090644-4090793)
chr6 (23-91)||(4090544-4090611)
chr6 (135-221)||(4065469-4065555)
chr6 (135-219)||(11680737-11680821)
[»] chr2 (6 HSPs)
chr2 (116-253)||(38422799-38422937)
chr2 (23-91)||(9913257-9913325)
chr2 (125-253)||(43673148-43673275)
chr2 (184-253)||(9425130-9425201)
chr2 (125-221)||(14904162-14904258)
chr2 (125-221)||(25621576-25621672)
[»] chr1 (1 HSPs)
chr1 (128-216)||(5509728-5509816)
[»] scaffold1364 (1 HSPs)
scaffold1364 (146-221)||(986-1061)
[»] scaffold0160 (1 HSPs)
scaffold0160 (139-221)||(25256-25338)
[»] scaffold0002 (1 HSPs)
scaffold0002 (135-221)||(98230-98316)
[»] scaffold0178 (1 HSPs)
scaffold0178 (174-222)||(1159-1207)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 32699091 - 32698856
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||    
T  32699091 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtagggtggaccacatgatcat 32698992  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32698991 aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt 32698892  T
Q  222 gtatcctctaaataaaagattaaaatttatttttca 257  Q
     |||||||||||||||| ||||||||||||||||||    
T  32698891 ttatcctctaaataaaatattaaaatttatttttca 32698856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 43323481 - 43323714
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||    
T  43323481 acaaaatagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtagggtggaccacatgatcat 43323580  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43323581 aagtgtgtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttattttt 43323680  T
Q  222 gtatcctctaaataaaagattaaaatttattttt 255  Q
     |||||||||||||||||||||||||||||||||    
T  43323681 ttatcctctaaataaaagattaaaatttattttt 43323714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 21491789 - 21491858
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac 91  Q
    |||||||||| | |||||||||||    ||||||| ||||||||||||||| ||||| ||||||||||||    
T  21491789 acaaagtagattaaaattttagcaccaaagaaatagagactaaaattttagcacttgtgaataatagcac 21491858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 13820758 - 13820826
Alignment:
Q  147 tatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattt 215  Q
    ||||||||| || | || |||| ||||||||||| |||||||||||||| || |||||| |||||||||    
T  13820758 tatcaaattcaattatgcaatccttttaatcaatttaagaaagttgacattactatattgatataattt 13820826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 43171274 - 43171370
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||  |||||||| | ||||||||||||| | || |||| |||  ||||||  ||||||||||||| || |||||| || ||||||||||||    
T  43171274 tgtgtctcgcatgatcttgcattatcaaatttaactatgcaatcatttcgatcaattaaagaaagttgacattactatattgatgtaatttattttt 43171370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 5120487 - 5120551
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataat 86  Q
    ||||||||||||||||||||| ||  ||| ||||| | ||| ||||||||| |||| ||||||||    
T  5120487 acaaagtagactgaaattttaacacctgaaaaatagaaactgaaattttagcacttaagaataat 5120551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 13826095 - 13826179
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattt 219  Q
    |||||||| | |||||||||| || | || |||| |||  ||||||  ||||||||||||| || |||||| |||||||||||||    
T  13826095 atgatcttgcattatcaaattcaattatgaaatcctttcgatcaattcaagaaagttgacattactatattgatataatttattt 13826179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 221
Target Start/End: Complemental strand, 29789791 - 29789683
Alignment:
Q  113 catgatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataa 212  Q
    ||||||||| | ||||||||  |||||||||| |||||| ||| || | || || | | |||||||||  | ||||||||||  || |||||| ||||||    
T  29789791 catgatcatgaatgtgtctcgcatgatcttacattatcatattcaattgtgcaaccctcttaatcaattcatgaaagttgacgttactatattgatataa 29789692  T
Q  213 tttattttt 221  Q
    |||||||||    
T  29789691 tttattttt 29789683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 12700564 - 12700329
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||        |||  |||||||||||||||||    
T  12700564 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagaacaaaaaaaagtaaagtggaccacatgatcat 12700465  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12700464 aagtgtgtctcatatgatcttactttatcaaatttaaatctataatcttttcaatcaatctaagaaacttgacactattatattaatataatttattttt 12700365  T
Q  222 gtatcctctaaataaaagattaaaatttatttttca 257  Q
     |||||||||||||||||||||||||||||||||||    
T  12700364 ttatcctctaaataaaagattaaaatttatttttca 12700329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 33443885 - 33443650
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||| ||||||||||||||||||    
T  33443885 acaaaatagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtaaggtggaccacatgatcat 33443786  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33443785 aagtgtgtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttattttt 33443686  T
Q  222 gtatcctctaaataaaagattaaaatttatttttca 257  Q
     |||||||||||||||||||||||||||||||||||    
T  33443685 ttatcctctaaataaaagattaaaatttatttttca 33443650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 9467237 - 9467466
Alignment:
Q  28 tagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcataagtgt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||  |||||||||||||||||||| |||    
T  9467237 tagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagttaggtggaccacatgatcataaatgt 9467336  T
Q  128 gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtatcc 227  Q
    |||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9467337 gtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttatttttttatcc 9467436  T
Q  228 tctaaataaaagattaaaatttatttttca 257  Q
    ||||||||||||||||||||||||||||||    
T  9467437 tctaaataaaagattaaaatttatttttca 9467466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 46947613 - 46947513
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattta--tttttgtatcctctaa 232  Q
    |||||||| | |||||||||| || | || |||||||| |||||| |||||||||||| ||||| |||||||||||||||||  |||||| |||||||||    
T  46947613 atgatcttgcattatcaaattcaattatgcaatcttttcaatcaaactaagaaagttgccactactatattaatataatttaattttttggatcctctaa 46947514  T
Q  233 a 233  Q
    |    
T  46947513 a 46947513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 12893273 - 12893189
Alignment:
Q  137 gatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||| | |||||||||| || | || |||| |||||||||||  ||||||||||||| || ||| || |||||||||||||||    
T  12893273 gatcttgcattatcaaattcaattatgcaatccttttaatcaattcaagaaagttgacattactatgttgatataatttattttt 12893189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 176; Significance: 7e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 10015503 - 10015738
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||        ||||||||||||||||||||||    
T  10015503 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgaaaataatagcacaaaaaaaagtagggtggaccacatgatcat 10015602  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10015603 aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt 10015702  T
Q  222 gtatcctctaaataaaagattaaaatttatttttca 257  Q
     ||||||||||||||||  |||||||||||||||||    
T  10015703 ttatcctctaaataaaattttaaaatttatttttca 10015738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 37548550 - 37548779
Alignment:
Q  28 tagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcataagtgt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||        ||  |||||||||||||||||||| |||    
T  37548550 tagactgaaattttagcatttgagaaatatagactaaaattttagcacttgataataatagcacaaaaaaaagtttggtggaccacatgatcataattgt 37548649  T
Q  128 gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtatcc 227  Q
    |||||||||||||||||||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37548650 gtctcatatgatcttactttgtcaaatttaaatttgcaatcttttcaatcaatctaagaaagttgacactattatattaatataatttatttttttatcc 37548749  T
Q  228 tctaaataaaagattaaaatttatttttca 257  Q
    ||||||||||||||||||||||||||||||    
T  37548750 tctaaataaaagattaaaatttatttttca 37548779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 36628810 - 36628562
Alignment:
Q  23 caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtag-------------ggtgga 109  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        |||              ||||||    
T  36628810 caaagtagacttaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcacaaaaaaaagtaaacaaaaaaagtatggtgga 36628711  T
Q  110 ccacatgatcataagtgtgtctc----atatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatatt 205  Q
    ||||||||||||||||||||| |    |||||||||| | |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||    
T  36628710 ccacatgatcataagtgtgtcactattatatgatcttgcattatcaaattcaattctgcaatctttttaatcaatctaagaaagttgacactattatatt 36628611  T
Q  206 aatataatttat-ttttgtatcctctaaataaaagattaaaatttattt 253  Q
    |||||||||||| |||| |||||||| ||||||||||||||||| ||||    
T  36628610 aatataatttattttttttatcctctgaataaaagattaaaattgattt 36628562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 15995362 - 15995296
Alignment:
Q  25 aagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac 91  Q
    |||||| ||||||||||||||| ||| ||||| ||||||||||||||| || |||||||||||||||    
T  15995362 aagtaggctgaaattttagcatctgaaaaataaagactaaaattttagcacctgagaataatagcac 15995296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 9420679 - 9420593
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||| | |||| ||||| || |||| ||||||||||||||||  ||||||||||||| || || ||| |||||||||||||||    
T  9420679 atgatcttgcattattaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactacattgatataatttattttt 9420593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 8113785 - 8113881
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||  |||||||| | |||||||||| || | || |||| ||| |||||||   ||||| |||||| || ||||||||| ||||||||||||    
T  8113785 tgtgtctcgcatgatcttccattatcaaattcaactatgcaatcctttcaatcaattcgagaaaattgacattactatattaatgtaatttattttt 8113881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 21863832 - 21863736
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||  ||||||||   |||||||||| || | || |||| ||| |||||||  || |||||||||| || | ||||||||||||||||||||    
T  21863832 tgtgtctcgcatgatcttggattatcaaattcaattttgcaatcatttcaatcaattcaaaaaagttgacattactttattaatataatttattttt 21863736  T

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Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 56366645 - 56366880
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcacnnnnnnnngtagggtggaccacatgatcat 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||        ||||||||||||||||||||||    
T  56366645 acaaagtagactgaaattttagcatttgagaaatatagattaaaattttagcacttgaaaataatagcacaaaaaaaagtagggtggaccacatgatcat 56366744  T
Q  122 aagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  56366745 aagtgtgtcacatatgatcttactttatcaaatttaaatatgtaatcttttcaatcaatctaagaaatttgacactattatattaatataatttattttt 56366844  T
Q  222 gtatcctctaaataaaagattaaaatttatttttca 257  Q
     ||||||||||||||||  |||||||||||||||||    
T  56366845 ttatcctctaaataaaattttaaaatttatttttca 56366880  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 24611221 - 24611317
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||| ||| |||||||| | |||||||||| || |||| ||||  || |||||||  ||||||||||||| || |||||||||| |||||||||||    
T  24611221 tgtgtgtcacatgatcttccattatcaaattcaattctgcaatcccttcaatcaattcaagaaagttgacaatactatattaataaaatttattttt 24611317  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 3665318 - 3665404
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||| | |||||||||| || | || |||| ||| |||||||  ||||||||||||| || |||||| |||||||||||||||    
T  3665318 atgatcttgcattatcaaattcaattttgcaatcctttcaatcaattcaagaaagttgacattactatattgatataatttattttt 3665404  T

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Target: scaffold0065 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 66566 - 66435
Alignment:
Q  126 gtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgtat 225  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| |||    
T  66566 gtgtctcatataatcttactttatcaaatttaaatctataatcttttcaatcaatgtaagaaagttgacactattatattaatataaattatttttttat 66467  T
Q  226 cctctaaataaaagattaaaatttatttttca 257  Q
    ||||||||||||||||||||||||| ||||||    
T  66466 cctctaaataaaagattaaaatttagttttca 66435  T

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Target: scaffold0065; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 66649 - 66580
Alignment:
Q  22 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  66649 acaaagtagactgaaattttagcatttgagaaatatagactaaaattttagcacttgagaataatagcac 66580  T

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Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 104 - 253
Target Start/End: Original strand, 4090644 - 4090793
Alignment:
Q  104 ggtggaccacatgatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattata 203  Q
    ||||||| |||||||||||||||| |||||||||||||| | ||||| |||| || |||  |||||||| ||||||| ||||||||||||||||||||||    
T  4090644 ggtggactacatgatcataagtgtatctcatatgatcttgcattatctaattcaattctacaatcttttcaatcaatttaagaaagttgacactattata 4090743  T
Q  204 ttaatataatttatttttgtatcctctaaataaaagattaaaatttattt 253  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  4090744 ttaatataatttatttttttatcctctaaataaaagatttaaattgattt 4090793  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 4090544 - 4090611
Alignment:
Q  23 caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac 91  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  4090544 caaagtagactgaaattttagcatttgagaaatata-actaaaattttagcacttgagaataatagcac 4090611  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 4065469 - 4065555
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||| | |||||||||| || | || |||  ||| |||||||| | ||||||||||| |||| ||||||||||||||||||||    
T  4065469 atgatcttgcattatcaaattcaattatgcaatgctttcaatcaatccatgaaagttgacattattgtattaatataatttattttt 4065555  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 11680737 - 11680821
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattt 219  Q
    |||||||| | |||||||||| || | || |||| ||| |||||||  ||||||||||||| ||||||||| || | ||||||||    
T  11680737 atgatcttgcattatcaaattcaactatgcaatcctttcaatcaattcaagaaagttgacattattatattgatgtgatttattt 11680821  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 38422799 - 38422937
Alignment:
Q  116 gatcataagtgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattt 215  Q
    |||||| | ||||||||| |||||||| | |||||||||| || |||   ||| ||| |||||||| |||||| ||||||||| |||||| |||||||||    
T  38422799 gatcatgaatgtgtctcacatgatcttgcattatcaaattcaattctacgatcctttcaatcaatccaagaaaattgacactactatattgatataattt 38422898  T
Q  216 a-tttttgtatcctctaaataaaagattaaaatttattt 253  Q
    | |||||| |||||||||| |||||||| | ||||||||    
T  38422899 attttttggatcctctaaagaaaagattgagatttattt 38422937  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 9913325 - 9913257
Alignment:
Q  23 caaagtagactgaaattttagcatttgagaaatatagactaaaattttagtacttgagaataatagcac 91  Q
    ||||||| |||||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||    
T  9913325 caaagtaaactgaaattttagcatctcatagatatagactaaaattttagcacttgagaataatagcac 9913257  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 43673148 - 43673275
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttatttttgta 224  Q
    ||||||| | |||||||| | |||||||||| || | ||||||||||| | |||| | ||||||||||||||||||||||| || |||||| |||||  |    
T  43673148 tgtgtcttacatgatcttgcattatcaaattcaattttgtaatcttttcagtcaacccaagaaagttgacactattatattcatttaattt-tttttcga 43673246  T
Q  225 tcctctaaataaaagattaaaatttattt 253  Q
     ||||||||  ||||||||| ||| ||||    
T  43673247 ccctctaaaggaaagattaagattgattt 43673275  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 9425130 - 9425201
Alignment:
Q  184 agaaagttgacactattatattaatataattta--tttttgtatcctctaaataaaagattaaaatttattt 253  Q
    |||||||||||| || ||||||||||| |||||  |||||| ||||||||||  ||||||||| ||| ||||    
T  9425130 agaaagttgacattactatattaatattatttatttttttggatcctctaaagtaaagattaagattgattt 9425201  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 14904258 - 14904162
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||  |||||||| | |||||||||| ||   || |||| ||| |||||||  ||||||||||||| || |||||| || ||||||||||||    
T  14904258 tgtgtctcgcatgatcttgcattatcaaattcaaccatgcaatcctttcaatcaattcaagaaagttgacattactatattgatgtaatttattttt 14904162  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 25621672 - 25621576
Alignment:
Q  125 tgtgtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    ||||||||  |||||||| | |||||||||| || | || |||  ||| |||||||  ||||||||||||| || ||| || |||||||||||||||    
T  25621672 tgtgtctcgcatgatcttgcattatcaaattcaactatgcaattctttcaatcaattcaagaaagttgacattactatttttatataatttattttt 25621576  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 5509728 - 5509816
Alignment:
Q  128 gtctcatatgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataattta 216  Q
    |||||| |||||||| | |||||||||| || |||| ||||||||||||||||  ||||||||||||| || |||||| ||||||||||    
T  5509728 gtctcacatgatcttgcattatcaaattcaattctgcaatctttttaatcaattcaagaaagttgacattactatattgatataattta 5509816  T

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Target: scaffold1364 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1364
Description:

Target: scaffold1364; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 1061 - 986
Alignment:
Q  146 ttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||||| |||| || |||| ||| |||||||  |||||| |||||| || |||||| |||||||||||||||    
T  1061 ttatcaaattcaaatttgcaatcatttcaatcaattcaagaaatttgacattactatattgatataatttattttt 986  T

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Target: scaffold0160 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 25338 - 25256
Alignment:
Q  139 tcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||| |||||||||||| || | || |||| ||| ||||| |  ||||||||||||| || |||||| |||||||||||||||    
T  25338 tcttgctttatcaaattcaattatgcaatcctttcaatcatttcaagaaagttgacattaatatattgatataatttattttt 25256  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 98230 - 98316
Alignment:
Q  135 atgatcttactttatcaaatttaaatctgtaatctttttaatcaatctaagaaagttgacactattatattaatataatttattttt 221  Q
    |||||||| | |||||||||| |||| || |||| |||  ||||||  |||||| |||||| || |||||| |||||||||||||||    
T  98230 atgatcttgcattatcaaattcaaatttgcaatcctttcgatcaattcaagaaatttgacattaatatattgatataatttattttt 98316  T

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Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 1159 - 1207
Alignment:
Q  174 aatcaatctaagaaagttgacactattatattaatataatttatttttg 222  Q
    |||||||  ||||||||||||| || ||||||||| |||||||||||||    
T  1159 aatcaattcaagaaagttgacattactatattaatgtaatttatttttg 1207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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