View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0105_low_3 (Length: 478)

Name: NF0105_low_3
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0105_low_3
NF0105_low_3
[»] chr7 (1 HSPs)
chr7 (30-470)||(43537486-43537947)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 30 - 470
Target Start/End: Complemental strand, 43537947 - 43537486
Alignment:
30 aaaaccagctaatatggtttcata----gtgtgattatttgacaacaaaaatctatttcacatacgatgtgtccacagtcttacaattgcatggaaaatg 125  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
43537947 aaaaccagctaatatggtttcatatatagtgtgattatttgacaacaaaaatctatttcacatacgatgtgtccaaagtcttacaattgcatggaaaatg 43537848  T
126 aaaaacaccataagttcctaacacgtgtacggtaaataatggctgggtcaagcatgcattgatggaaggtcaattatcata---------catgtaatta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
43537847 aaaaacaccataagttcctaacacgtgtacggtaaataatggctgggtcaagcatgcattgatggaaggtcaattatcatacatgatatacatgtaatta 43537748  T
217 catctttcatgtcgcaagttcagtacttatcacaaagacgtgctcaattatatgagtagacaaaaccacaacataacataat--------tatatatatt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||     
43537747 catctttcatgtcgcaagttcagtacttatcacaaagacgtgctcaattatatgagtagacaaaaccacaacataacataattatatatatatatatata 43537648  T
309 ggacccaactagaagggtattttggtagttgtatccataaagctctaatctcttaactggcctttatatagagttttgctccacatgattgttatatatc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
43537647 ggacccaactagaagggtattttggtagttgtatccataaagctctaacctcttaactggcctttatatagagttttgctccacatgattgttatagatc 43537548  T
409 cattccattttcatataatcccgcgattttcttctcaagcaatcctgtctcctgtctctgct 470  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
43537547 cattccattttcatataatcccgcgattttcttctcaagcaatactgtctcctgtttctgct 43537486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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