View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0105_low_6 (Length: 299)
Name: NF0105_low_6
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0105_low_6
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 43365501 - 43365300
Alignment:
Q
1
tgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgatcaagaaacgtgtaagtgtttcattaaaggtccctaattg
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
T
43365501
tgcgtgttccaaggaaatgcacccccaaatgctacgagggtcgtgttttaccagtgctgatcaagaaacgtgtaagtgtttaattaaaggtccctaattg
43365402
T
Q
101
gaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattgtaagttaggtgtccaacatgctagttattgttgtgatga
200
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
T
43365401
gaagctttcatcaaaattgtgtgcctcaattttattaataaaatttgtggttccaacattgtaagttaggtgtccaacatgctagttattgttgtgttga
43365302
T
Q
201
tg
202
Q
||
T
43365301
tg
43365300
T
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