View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0105_low_7 (Length: 288)
Name: NF0105_low_7
Description: NF0105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0105_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 32216407 - 32216661
Alignment:
| Q |
1 |
caattgaattttgggaaatcctacatggttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32216407 |
caattgaattttgggaaatcctacatagttgcatatataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaa |
32216506 |
T |
|
| Q |
101 |
atgactttgcagattcttcaaattcaaacatcatgccgactcgtgctttcctatttccattaccatctttatcattcacttgtctttcagccgagtttat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32216507 |
atgactttgcagattcttcagattcaaacatcatgccgactcgtgctttcctatttacattaccatctttatcattcacttgtctttcaaccgagtttgc |
32216606 |
T |
|
| Q |
201 |
agtcatacttcgttccttgcctttcttagtttcatcattttctaaaacaggttta |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32216607 |
agtcatacttcgttccttgcctttcttagtttcatcattttctaaaacaggttta |
32216661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 32216395 - 32216177
Alignment:
| Q |
37 |
ataacacggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgc |
136 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32216395 |
ataacacagttgaattgacaaacgtacatgctaaatcctacatgtcttgcatatgcaccataaaatgactttgcagattcttcagattcaaacatcatgc |
32216296 |
T |
|
| Q |
137 |
cgactcgtgctttcctatttccattaccatctttatcattcacttgtctttcagccgagtttatagtcatacttcgttccttgcctttcttagtttcatc |
236 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32216295 |
caactcgtggtttcctatttccattaccatctttatcattcacttgtctttcagccgagtttatagtcatacttcgttccttgcctttcttagtttcatc |
32216196 |
T |
|
| Q |
237 |
attttctaaaacaggttta |
255 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
32216195 |
attttctaaaacatgttta |
32216177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 44 - 177
Target Start/End: Original strand, 16837441 - 16837574
Alignment:
| Q |
44 |
ggttgaattgacaaacgtcgatgctaaatccaacatgtcttgcatatgcaccataaaatgactttgcagattcttcaaattcaaacatcatgccgactcg |
143 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
16837441 |
ggttgaattgacaaaagccgatgctaaatcctacatgtcttgcatatgcactataaaatgacactgcagattctttagattcaaagatcatgccgactcg |
16837540 |
T |
|
| Q |
144 |
tgctttcctatttccattaccatctttatcattc |
177 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
16837541 |
tggtttcctatttccattaccatctttatcattc |
16837574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University