View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0106_high_3 (Length: 256)
Name: NF0106_high_3
Description: NF0106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0106_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52140574 - 52140347
Alignment:
| Q |
1 |
catgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactact |
100 |
Q |
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| T |
52140574 |
catgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatgacatgcatttgtttggcagcttaggaaatctatatcatactagtactact |
52140475 |
T |
|
| Q |
101 |
ctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |
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| T |
52140474 |
gtccaaaatctcaaccagaattatgttctctttgatccaacaattccaaatgatgatcacagtctaggaatctcggtttacatgtgtccaaatggatgca |
52140375 |
T |
|
| Q |
201 |
cttatggtattacatcgtgtgatcaatg |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
52140374 |
cttatggtattacatcgtgtgatcaatg |
52140347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 52130903 - 52130840
Alignment:
| Q |
68 |
agcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
131 |
Q |
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|||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52130903 |
agcttaggcaatctgcatcacactagtagtactctccaaaacctcaaccagaattatgttctct |
52130840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17525142 - 17525368
Alignment:
| Q |
1 |
catgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17525142 |
catgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacgacatgcatttgtttggcagcttaggaaatctgtatcatactagtactact |
17525241 |
T |
|
| Q |
101 |
ctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgca |
200 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
17525242 |
gtccaaaatctcaaccaaaattacgttctcttcgatccaacaattccaaatgatgatcacagcctaggaacctcgttttacatgtgtccaaatggatgca |
17525341 |
T |
|
| Q |
201 |
cttatggtattacatcgtgtgatcaatg |
228 |
Q |
| |
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|||| |||||||||||||| |||||||| |
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|
| T |
17525342 |
cttaaggtattacatcgtg-gatcaatg |
17525368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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