View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0106_low_1 (Length: 591)
Name: NF0106_low_1
Description: NF0106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0106_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 53791835 - 53791456
Alignment:
| Q |
54 |
cagagacatggttgatgattggtttggtttcacagttcagcttactactgaaaaactaa-gcacccgtgagacaaacatgtgcaacgtgtacaacattgg |
152 |
Q |
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| T |
53791835 |
cagagacatggttgatgattggtttggtttcacagttcagcttact---gaaaaactaaagcacccgtgagacaaacatgtgcaacgtgtacaacattgg |
53791739 |
T |
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| Q |
153 |
agttaaataaataaagtcaaataactcatttgttcgtttcgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagtagcttt |
252 |
Q |
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| T |
53791738 |
agttaaataaataaagtcaaataactcatttgttcgttttgtatgcatacaaaactaacattatatctactctatactatatacaaaactaagtagcttt |
53791639 |
T |
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| Q |
253 |
tcttccttg-----tatttagcctgcctttgcgttattgaact-acttttttggaagacacaaacattatttcttggaaaaagactttccatgtcttgtt |
346 |
Q |
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| T |
53791638 |
tcttccttgtattgtatttagcctggctttgcgttattgaactaacttttttggaagacacaaacattatttcttggaaaaagactttccatgtcttgtt |
53791539 |
T |
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| Q |
347 |
catggtattgccaagatgaaaataacaagccagggcagcgaggttttaaattattgattgaaaactttttatgagaaaagaaaa |
430 |
Q |
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| T |
53791538 |
catggtattgccaagatgaaaataacaagccagggcagcgtggttttaaattattgattgaaaac-ttttatgagaaaagaaaa |
53791456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 487 - 564
Target Start/End: Complemental strand, 53791152 - 53791075
Alignment:
| Q |
487 |
atagtattaacttacctaatacacgtagaattaaaattagaattattgtggcataccaacatggtcccaaaatgtgaa |
564 |
Q |
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| T |
53791152 |
atagtattaacttacgtaatacacgtagaattaaaattagaattattgtggcataccaacatggtcccaaaatgtgaa |
53791075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 428 - 492
Target Start/End: Complemental strand, 53791352 - 53791288
Alignment:
| Q |
428 |
aaagactataatgaatcttcactctattatttttatgttgtaagatatttattagagatatagta |
492 |
Q |
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| T |
53791352 |
aaagactataaggaatctttactctattatttttatgttgtaagatatttattagagatatagta |
53791288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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