View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0106_low_3 (Length: 328)

Name: NF0106_low_3
Description: NF0106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0106_low_3
NF0106_low_3
[»] chr6 (2 HSPs)
chr6 (29-318)||(5550684-5550973)
chr6 (29-281)||(5539879-5540136)
[»] chr3 (3 HSPs)
chr3 (148-210)||(15801456-15801518)
chr3 (149-211)||(15801722-15801784)
chr3 (171-213)||(26936779-26936821)
[»] chr8 (2 HSPs)
chr8 (143-199)||(11567573-11567629)
chr8 (134-188)||(37384734-37384788)
[»] chr1 (3 HSPs)
chr1 (153-211)||(4557003-4557061)
chr1 (143-198)||(33302028-33302083)
chr1 (149-211)||(38474826-38474888)
[»] chr4 (1 HSPs)
chr4 (149-188)||(43081820-43081859)
[»] chr2 (2 HSPs)
chr2 (151-206)||(38125395-38125450)
chr2 (162-206)||(42510694-42510738)
[»] chr7 (1 HSPs)
chr7 (149-207)||(34726774-34726832)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 318
Target Start/End: Original strand, 5550684 - 5550973
Alignment:
Q  29 agatatcactactcttgatatataatttccttctaagtgggttggtcaatctagtccctcaaatttgatattttgcactttagtacttgaaattgtaagg 128  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5550684 agatatcactactcttgatatataatttccttctaagcgggttggtcaatgtagtccctcaaatttgatattttgcactttagtacttgaaattgtaagg 5550783  T
Q  129 gaatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcgaaattaatatacactca 228  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5550784 ggatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcgaaattaatatacactca 5550883  T
Q  229 catttcctttttctgtgtggttacagtccaagtgcgtcgcatttggcatcggtcgttaatggctttccgaaaaatagtattacgcctttg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5550884 catttcctttttctgtgtggttacagtccaagtgcgtcgcatttggcatcggtcgttaatggctttccgaaaaatagtattacgcctttg 5550973  T

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Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 29 - 281
Target Start/End: Complemental strand, 5540136 - 5539879
Alignment:
Q  29 agatatcactactcttgatatataatttccttctaagtgggttggtcaatctagtccctcaaatttgatattttgcactttagtacttgaaattgtaagg 128  Q
    |||| |||||||| ||||||||| |||| |||||||  |||| ||| |||  | |||||||||||||||||| |  | |||||| ||||||||||||| |    
T  5540136 agatttcactacttttgatatatgattttcttctaaacgggtcggtgaattaactccctcaaatttgatattatatattttagtccttgaaattgtaaag 5540037  T
Q  129 gaatgaaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcgaaattaa---tatacac 225  Q
    | |  |||||||| |||   |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||   |||||||    
T  5540036 ggactaaattgctatttcacaaatttgagggattgaattgactgacccttacaatttcaatgactaaaatgtctatttactcgaaattaacattatacac 5539937  T
Q  226 t--cacatttcctttttctgtgtggttacagtccaagtgcgtcgcatttggcatcggt 281  Q
    |  |||||||||||||||||||||||||||||||||||||| || ||||||| |||||    
T  5539936 tcacacatttcctttttctgtgtggttacagtccaagtgcgccgaatttggcctcggt 5539879  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 15801518 - 15801456
Alignment:
Q  148 aaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactc 210  Q
    ||||||||||||||| ||||||| |||| ||||||||| |||||||||||| |||||||||||    
T  15801518 aaaatttgagggattgaattgaccgaccgttacaatttgaaagactaaaatatctatttactc 15801456  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 15801722 - 15801784
Alignment:
Q  149 aaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcg 211  Q
    |||||||||| |  |||| ||| |||| |||||||||||| ||||||||||||||||||||||    
T  15801722 aaatttgaggaacaaaatcgaccgacctttacaatttcaaggactaaaatgtctatttactcg 15801784  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 26936821 - 26936779
Alignment:
Q  171 agacccttacaatttcaaagactaaaatgtctatttactcgaa 213  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||    
T  26936821 agacccttaaaatgtcaaagactaaaatgtttatttactcgaa 26936779  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 11567629 - 11567573
Alignment:
Q  143 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaatg 199  Q
    ||||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  11567629 ttttgtaaatttgagggactaaattgaccgacccttacaatttcaaggactaaaatg 11567573  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 37384788 - 37384734
Alignment:
Q  134 aaattgcttttttgaaaatttgagggattaaattgacagacccttacaatttcaa 188  Q
    |||||||  ||||| |||||||||||| ||||||||| |||| ||||||||||||    
T  37384788 aaattgcaattttgcaaatttgagggactaaattgactgacctttacaatttcaa 37384734  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 4557061 - 4557003
Alignment:
Q  153 ttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcg 211  Q
    |||||||||||||||||| |||||||||||||||||  |||| |||||| |||||||||    
T  4557061 ttgagggattaaattgaccgacccttacaatttcaagaactataatgtcaatttactcg 4557003  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 33302083 - 33302028
Alignment:
Q  143 ttttgaaaatttgagggattaaattgacagacccttacaatttcaaagactaaaat 198  Q
    |||| |||||||||| || ||||||||| |||| ||||| ||||||||||||||||    
T  33302083 ttttaaaaatttgagcgactaaattgaccgacctttacattttcaaagactaaaat 33302028  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 38474826 - 38474888
Alignment:
Q  149 aaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctatttactcg 211  Q
    |||||| ||||| |||||||||   || |||||||||||| ||||||||||| ||||||||||    
T  38474826 aaattttagggactaaattgaccacccgttacaatttcaaggactaaaatgtatatttactcg 38474888  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 188
Target Start/End: Original strand, 43081820 - 43081859
Alignment:
Q  149 aaatttgagggattaaattgacagacccttacaatttcaa 188  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  43081820 aaatttgatggactaaattgacagacccttacaatttcaa 43081859  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 38125395 - 38125450
Alignment:
Q  151 atttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctattt 206  Q
    |||| ||||||| ||||||| |||| ||||||||||||| | ||||||||||||||    
T  38125395 atttcagggattgaattgaccgaccattacaatttcaaatattaaaatgtctattt 38125450  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 42510738 - 42510694
Alignment:
Q  162 taaattgacagacccttacaatttcaaagactaaaatgtctattt 206  Q
    ||||||||| |||| |||||||||||| |||||||||| ||||||    
T  42510738 taaattgaccgacctttacaatttcaaggactaaaatgcctattt 42510694  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 34726774 - 34726832
Alignment:
Q  149 aaatttgagggattaaattgacagacccttacaatttcaaagactaaaatgtctattta 207  Q
    |||| ||||||| |||||||| |||||||||||||||| ||| |||||||  |||||||    
T  34726774 aaatatgagggagtaaattgaaagacccttacaatttccaagtctaaaatacctattta 34726832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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