View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0106_low_9 (Length: 256)
Name: NF0106_low_9
Description: NF0106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0106_low_9
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52140574 - 52140347
Alignment:
Q
1
catgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactact
100
Q
||||||||| |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
T
52140574
catgtttcgcttgtcttttggtactgttgtaaggctcatgagcaacaatgacatgcatttgtttggcagcttaggaaatctatatcatactagtactact
52140475
T
Q
101
ctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgca
200
Q
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||
T
52140474
gtccaaaatctcaaccagaattatgttctctttgatccaacaattccaaatgatgatcacagtctaggaatctcggtttacatgtgtccaaatggatgca
52140375
T
Q
201
cttatggtattacatcgtgtgatcaatg
228
Q
||||||||||||||||||||||||||||
T
52140374
cttatggtattacatcgtgtgatcaatg
52140347
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 52130903 - 52130840
Alignment:
Q
68
agcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct
131
Q
|||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||
T
52130903
agcttaggcaatctgcatcacactagtagtactctccaaaacctcaaccagaattatgttctct
52130840
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 17525142 - 17525368
Alignment:
Q
1
catgtttcgtttgtcttttggtactgttgtaaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactact
100
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
T
17525142
catgtttcgtttgtcttttggtactgttgtaaggctcatgagctacaacgacatgcatttgtttggcagcttaggaaatctgtatcatactagtactact
17525241
T
Q
101
ctccaaaacctcaaccagaattatgttctctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgca
200
Q
||||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
T
17525242
gtccaaaatctcaaccaaaattacgttctcttcgatccaacaattccaaatgatgatcacagcctaggaacctcgttttacatgtgtccaaatggatgca
17525341
T
Q
201
cttatggtattacatcgtgtgatcaatg
228
Q
|||| |||||||||||||| ||||||||
T
17525342
cttaaggtattacatcgtg-gatcaatg
17525368
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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