View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0107_high_1 (Length: 445)
Name: NF0107_high_1
Description: NF0107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0107_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 48062849 - 48063282
Alignment:
| Q |
1 |
atttctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48062849 |
atttctggtagtcactgtttgtgaggatatgacggttcatcgcacatccatatggaaaatttgcccttgtttgtttaataacaactgttgctccttccaa |
48062948 |
T |
|
| Q |
101 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagattaacttaagcattttttctgctatacatc |
200 |
Q |
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| T |
48062949 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatcagat-aacttaagcattttttctgctatacatc |
48063047 |
T |
|
| Q |
201 |
tactactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatg |
300 |
Q |
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| T |
48063048 |
tactactgattttcattatgcaatttggtatgctattgagtttgttcctcttaatgacaacatgcttgactattggtctgcgaggccgagagtcgtgatg |
48063147 |
T |
|
| Q |
301 |
gtagtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtgtctatgtgaaaacaatataagcattagcttaccctctcaa |
400 |
Q |
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| T |
48063148 |
gtagtactagtaatacaaaaataaaagcaacgattcatcccctggtgcaaagcacaggtatctatgtgaaaacaatataagcattagcttaccctctcaa |
48063247 |
T |
|
| Q |
401 |
tgctgctatcttggtgtgacctccattgctctctg |
435 |
Q |
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| T |
48063248 |
tgctgctatcttggtgtgacctccattgctctctg |
48063282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 48106488 - 48106651
Alignment:
| Q |
5 |
ctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaacact |
104 |
Q |
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|||||||||| |||||||||| |||||| ||||||| |||||||| |||| |||| |||| |||||||| | || |||||| ||||||||||||| || |
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| T |
48106488 |
ctggtagtcaatgtttgtgagtatatgatggttcatcccacatccaaatgggaaatctgcctttgtttgtgttatcacaactgttgctccttccaatgct |
48106587 |
T |
|
| Q |
105 |
gtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
168 |
Q |
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||||||||| || | |||| ||||||||||| || ||||||||||||| | ||||||||||| |
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| T |
48106588 |
gtttcatttacattacttacatggaatctcactctactcttacgtacctacaagttataaatca |
48106651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 48066938 - 48067100
Alignment:
| Q |
1 |
atttctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaa |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||| |||||| ||||||| |||| |||| |||| |||||||||| || ||||| ||||||||||||| |
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| T |
48066938 |
atttctggtactcaatgtttgtgaggatgtgatagttcatcccacatccgaatgggaaatctgcctttgtttgtttgatgacaaccgttgctccttccaa |
48067037 |
T |
|
| Q |
101 |
cactgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttata |
163 |
Q |
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|||||| ||| ||||| |||| |||||| ||||| |||||||||||||||| ||| |||| |
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| T |
48067038 |
tgatgtttcgtttagatgatttacttggaatgtcaccttgctcttacgtacctgcaggatata |
48067100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 48099886 - 48100050
Alignment:
| Q |
4 |
tctggtagtcactgtttgtgaggatatgacggttcattgcacatccatatggaaaatttgcccttgtttgtttaataacaactattgctccttccaacac |
103 |
Q |
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||||||| ||| |||||| ||||| | | ||||||| |||||||| ||| ||||||||| |||||||||| || |||| | ||||||||||| | |
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| T |
48099886 |
tctggtactcaaagtttgtaaggatgtaatggttcatcccacatccaagtgggaaatttgcctttgtttgtttgatgacaattgatgctccttccatttc |
48099985 |
T |
|
| Q |
104 |
tgtttcatttggatgagttacctggaatctcaccctgctcttacgtacctgtaggttataaatca |
168 |
Q |
| |
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||||| ||| |||||||||| |||||||||||| ||||||| |||||||| || |||||||||| |
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| T |
48099986 |
tgttttgtttagatgagttacatggaatctcaccttgctcttgcgtacctgcagtttataaatca |
48100050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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