View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0107_high_6 (Length: 223)
Name: NF0107_high_6
Description: NF0107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0107_high_6
Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 48062744 - 48062872
Alignment:
Q
1
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
48062744
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac
48062843
T
Q
101
aaaccatttctggtagtcactgtttgtga
129
Q
|||||||||||||||||||||||||||||
T
48062844
aaaccatttctggtagtcactgtttgtga
48062872
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 48066833 - 48066967
Alignment:
Q
1
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac
100
Q
|||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
T
48066833
gcatggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacac
48066932
T
Q
101
aaaccatttctggtagtcactgtttgtgatgatgt
135
Q
||||||||||||||| ||| ||||||||| |||||
T
48066933
aaaccatttctggtactcaatgtttgtgaggatgt
48066967
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 48099779 - 48099892
Alignment:
Q
2
catggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacaca
101
Q
||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| ||||| |||| |||||| |||||||||||||||
T
48099779
catggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacaca
48099878
T
Q
102
aaccatttctggta
115
Q
|||||| |||||||
T
48099879
aaccatctctggta
48099892
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 48106384 - 48106507
Alignment:
Q
6
gcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaacc
105
Q
||||||| |||||| |||||||| |||||| | ||| | |||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
T
48106384
gcatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaacc
48106483
T
Q
106
atttctggtagtcactgtttgtga
129
Q
||| |||||||||| |||||||||
T
48106484
attcctggtagtcaatgtttgtga
48106507
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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