View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0107_low_5 (Length: 254)
Name: NF0107_low_5
Description: NF0107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0107_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 3068217 - 3068008
Alignment:
| Q |
12 |
tcaatgacactggcaactttgtgcttgaggatggtgaattcaaaagtcggtgggaaactttcaactttcctggtgacaccttgttgccttctcaggttct |
111 |
Q |
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| T |
3068217 |
tcaatgacactggcaactttgtgcttgaggatggtgaattcaaaagtcggtgggaaactttcaactttcctagtgacaccttgttgccttctcaggttct |
3068118 |
T |
|
| Q |
112 |
tcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3068117 |
tcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcat |
3068018 |
T |
|
| Q |
212 |
tctattaatt |
221 |
Q |
| |
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|||||||||| |
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| T |
3068017 |
tctattaatt |
3068008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 3064197 - 3063990
Alignment:
| Q |
14 |
aatgacactggcaactttgtgcttgaggatggtgaattcaaaagtcggtgggaaactttcaactttcctggtgacaccttgttgccttctcaggttcttc |
113 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||| |||| |||||| |||||||| |||||| ||||||| || ||||||||||||||| | |
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| T |
3064197 |
aatgacactggcaactttgtgcttcaggatggtaaattcaacagtctgtgggagactttcaagtttcctagtgacacgttattgccttctcaggttgtgg |
3064098 |
T |
|
| Q |
114 |
gtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcattc |
213 |
Q |
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| T |
3064097 |
ataaaggaagaaagctttcttcaaggcttaaggagacagatttcagtaaaggaaggtttgaactcattttacaaagtgatggtaatcttgttatgcattc |
3063998 |
T |
|
| Q |
214 |
tattaatt |
221 |
Q |
| |
|
|||||||| |
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| T |
3063997 |
tattaatt |
3063990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 3034280 - 3034439
Alignment:
| Q |
62 |
tgggaaactttcaactttcctggtgacaccttgttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagta |
161 |
Q |
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||||| |||||||| | |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
3034280 |
tgggagactttcaagtatcctagtgacaccttgttgccttctcagtttcttcaaaaaggtggaagcctttcttcaaggcttaaggagtcaaatttcagta |
3034379 |
T |
|
| Q |
162 |
aaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcattctattaatt |
221 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||| |
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| T |
3034380 |
aaggaaggtttgagcttgttttacaaaatgatggtaatcttgttattcattctattaatt |
3034439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 65 - 221
Target Start/End: Original strand, 3042325 - 3042481
Alignment:
| Q |
65 |
gaaactttcaactttcctggtgacaccttgttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaag |
164 |
Q |
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||||||||||| |||||| | || |||||||||||||||||| |||||| |||||| || ||||||||||| ||||||||| ||||||||||||||| |
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| T |
3042325 |
gaaactttcaagtttcctagggaaaccttgttgccttctcagtttcttcaaaaaggtcaaaagctttcttcaaggcttaaggagtcaaatttcagtaaag |
3042424 |
T |
|
| Q |
165 |
gaaggtttgagctccttttacaaaataatggtagtcttgttatgcattctattaatt |
221 |
Q |
| |
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||||||||||||| ||||||||| || |||||| ||||||||||||||||||||||| |
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| T |
3042425 |
gaaggtttgagcttcttttacaagatgatggtaatcttgttatgcattctattaatt |
3042481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 3040111 - 3040270
Alignment:
| Q |
62 |
tgggaaactttcaactttcctggtgacaccttgttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagta |
161 |
Q |
| |
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||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||| || | |||| ||||||||||| |
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| T |
3040111 |
tgggagactttcaagtttcctagtgacaccttgttgccttctcaggttcttcaaaaagatggaaagctttcttcaaggctaagggagtcaaatttcagtg |
3040210 |
T |
|
| Q |
162 |
aaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcattctattaatt |
221 |
Q |
| |
|
|||||||||||||||| |||||| || ||| |||| |||||||||| |||||||||||| |
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| T |
3040211 |
aaggaaggtttgagcttcttttagaagatactggtgatcttgttatgtattctattaatt |
3040270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 3055142 - 3055301
Alignment:
| Q |
62 |
tgggaaactttcaactttcctggtgacaccttgttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagta |
161 |
Q |
| |
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||||| |||||||| | |||| |||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||| || ||||||| |||| |
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| T |
3055142 |
tgggagactttcaagtatcctagtgacaccttgttgccatctcaatttcttcaaaaaggtggaaagctttcttcaaggcttaagcagtcaaattttagta |
3055241 |
T |
|
| Q |
162 |
aaggaaggtttgagctccttttacaaaataatggtagtcttgttatgcattctattaatt |
221 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||| |
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| T |
3055242 |
aaggaaggtttgagcttcttttacaagaaaatggtgatcttgttatgcattctattaatt |
3055301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 3071839 - 3071689
Alignment:
| Q |
68 |
actttcaactttcctggtgacaccttgttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaaggaa |
167 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||| ||| |||| ||||| ||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
3071839 |
actttcgactttccctgtgacaccttgttgccttctcaggttattctaaaagatggaaagctttcttcaaggcttaaggagtcaaatttcagtaaaggaa |
3071740 |
T |
|
| Q |
168 |
ggtttgagctccttttacaaaataatggtagtcttgttatgcattctatta |
218 |
Q |
| |
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|||||||||| ||||| ||||| || ||| ||||||||| |||||||||| |
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| T |
3071739 |
ggtttgagcttgttttaaaaaatgatagtaatcttgttattcattctatta |
3071689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 207
Target Start/End: Complemental strand, 3066410 - 3066298
Alignment:
| Q |
94 |
gttgccttctcaggttcttcgtaaaggtggaagcctttcttcaagacttaaggagacaaatttcagtaaaggaaggtttgagctccttttacaaaataat |
193 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | |||||||| |||| ||||| |||||||||||||||||||||||| |||||| |||||||| || |
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|
| T |
3066410 |
gttgccttctcaggttcttgaaataggtggaagt-tctcttcaaggcttatggagaaaaatttcagtaaaggaaggtttgaactccttctacaaaatgat |
3066312 |
T |
|
| Q |
194 |
ggtagtcttgttat |
207 |
Q |
| |
|
||| ||||||||| |
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|
| T |
3066311 |
tgtaatcttgttat |
3066298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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