View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0107_low_6 (Length: 251)
Name: NF0107_low_6
Description: NF0107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0107_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 32886009 - 32885788
Alignment:
| Q |
30 |
ataacttgttaaaatattaaatccaaaattt-caaatacttattatacaagaaaaaatttcattattaagtgcaccgacaagtcataagtcattgtttca |
128 |
Q |
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| T |
32886009 |
ataacttgttaaaatattaaatacaaaattttcaaatacttattatacaagaaaaaatttcattattaagtgcaccgacaagtcataagtcattgtttaa |
32885910 |
T |
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| Q |
129 |
gtgcatggatggacatattgtagttggatgaacaagacaatgcctaagaaaaaattaaaacatataaatgtacatatgaagtaagttatgaaccacatac |
228 |
Q |
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| T |
32885909 |
gtgcatggatggacatattgtagttggatgaacaagacaatgcctaagaaaaaatt-aaacatataaatgtacatatgaagtaagttatgaaccacatac |
32885811 |
T |
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| Q |
229 |
ataaaaccaataactgtcgcact |
251 |
Q |
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| T |
32885810 |
ataaaaccaataactgtcgcact |
32885788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 32881409 - 32881261
Alignment:
| Q |
86 |
tttcattattaagtgcaccgacaagtcataagtcattgtttcagtgcatggatggacatattgtagttggatgaacaagacaatgcctaagaaaaaatta |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
32881409 |
tttcattattaagtgcaccgacaagtcataagtcattgtttaagtgcatggatggacatattgtagttggatgaacaagacaattcctaaggaaaaatt- |
32881311 |
T |
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| Q |
186 |
aaacatataaatgtacatatgaagtaagttatgaaccacatacataaaac |
235 |
Q |
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| T |
32881310 |
aaacatataaatgtacatatgaagtaagttatgaaccacatatataaaac |
32881261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 32881725 - 32881674
Alignment:
| Q |
31 |
taacttgttaaaatattaaatccaaaa-tttcaaatacttattatacaagaa |
81 |
Q |
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| T |
32881725 |
taacttgttaaaatattgaatccaaaattttcaaatacttattatacaagaa |
32881674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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