View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0107_low_7 (Length: 223)
Name: NF0107_low_7
Description: NF0107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0107_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 48062744 - 48062872
Alignment:
| Q |
1 |
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48062744 |
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac |
48062843 |
T |
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| Q |
101 |
aaaccatttctggtagtcactgtttgtga |
129 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
48062844 |
aaaccatttctggtagtcactgtttgtga |
48062872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 48066833 - 48066967
Alignment:
| Q |
1 |
gcatggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacac |
100 |
Q |
| |
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|||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
48066833 |
gcatggcatcaggaatagtatagttttcctggccttgaattttctctgtactataccacttcatctcattagtgaaagttgtgtacttgaatcttgacac |
48066932 |
T |
|
| Q |
101 |
aaaccatttctggtagtcactgtttgtgatgatgt |
135 |
Q |
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||||||||||||||| ||| ||||||||| ||||| |
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| T |
48066933 |
aaaccatttctggtactcaatgtttgtgaggatgt |
48066967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 48099779 - 48099892
Alignment:
| Q |
2 |
catggcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacaca |
101 |
Q |
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||||||||||||||||||||||||||| |||||||| | | ||||||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||| |
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| T |
48099779 |
catggcatctgggatagtatagttttcctggccttgaaatctctctgtactataccacttcatctcattagtaaaagctgtgtacttgaatcttgacaca |
48099878 |
T |
|
| Q |
102 |
aaccatttctggta |
115 |
Q |
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|||||| ||||||| |
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| T |
48099879 |
aaccatctctggta |
48099892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 48106384 - 48106507
Alignment:
| Q |
6 |
gcatctgggatagtatagttttcatggccttggattttctctgtactataccacttcatctcgttagtgaaagttgtgtatttgaatcttgacacaaacc |
105 |
Q |
| |
|
||||||| |||||| |||||||| |||||| | ||| | |||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||| |
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| T |
48106384 |
gcatctgagatagtgtagttttcttggcctggaattatttctgtactataccatttcatttcattggtgaaagttgtgtatttgaatcttgacacaaacc |
48106483 |
T |
|
| Q |
106 |
atttctggtagtcactgtttgtga |
129 |
Q |
| |
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||| |||||||||| ||||||||| |
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|
| T |
48106484 |
attcctggtagtcaatgtttgtga |
48106507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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