View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0109-INSERTION-2 (Length: 707)
Name: NF0109-INSERTION-2
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109-INSERTION-2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 356 - 606
Target Start/End: Original strand, 25814482 - 25814732
Alignment:
| Q |
356 |
aagttttgtctacaaatacatgtacccaacaaaatttcagggtgcgtaagaattyatttgtttctaaaccttgtgtcgcctacctttttacttgttgaaa |
455 |
Q |
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| T |
25814482 |
aagttttgtctacaaatacatgtacccaacaaaatttcagggtgcgtaagaatttatttgtttctaaaccttgtgtcgcctacctttttacttgttgaaa |
25814581 |
T |
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| Q |
456 |
ttctttctcaagaaagccaatgaatctcacttgcactagcccttcttctacccgaccggaagaatttatcattaaaagtaagggtcatgctaacttaatg |
555 |
Q |
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| T |
25814582 |
ttctttctcaagaaagccaatgaatctcacttgcactagcccttcttctacccgaccggaagaatttatcattaaaagtaagggtcatgctaacttaatg |
25814681 |
T |
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| Q |
556 |
tccctgaggcacccatcaaagaaacaaaaagaaaaagtttccattgaaaat |
606 |
Q |
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| T |
25814682 |
tccctcaagcatccgtcaaagaaacaaaaagaaaaagttttcattgaaaat |
25814732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 25814257 - 25814462
Alignment:
| Q |
8 |
tttatccactagaggagccaagcaagtgctaccatttaaccatttctagttccaaaatgattgtcctcacctttaccaatactctacctgcatccttctc |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25814257 |
tttatccactagaggagccaggcaagtgctaccatttaaccatttctagttccaaaatgactgtcctcacctttaccaatactctacctgcatccttctc |
25814356 |
T |
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| Q |
108 |
acaataaaaacctatgtagaccttatactatgtcaaacatagcttgaattgtgatcaattaaactgagctccaagaaaatcaccattcaaaaaatatttg |
207 |
Q |
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| T |
25814357 |
acaataaaaacctatgtagaccttatagtatgtcaaacatagcttgaattgtgatcaattaaactgagctccaagaaaatcaccattcaaaaaatatttg |
25814456 |
T |
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| Q |
208 |
ctttta |
213 |
Q |
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|||||| |
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| T |
25814457 |
ctttta |
25814462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 707
Target Start/End: Original strand, 25814798 - 25814829
Alignment:
| Q |
676 |
gaaaagagtatctcaatgaatcttaatgagca |
707 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25814798 |
gaaaagagtatctcaatgaatcttaatgagca |
25814829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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