View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0109-INSERTION-3 (Length: 486)
Name: NF0109-INSERTION-3
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109-INSERTION-3 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 472
Target Start/End: Original strand, 38006132 - 38006584
Alignment:
| Q |
5 |
acatttgtacatgccttaattatggtagatgcatgtagtcacaatcttaaatgcatgcagtagaaaatttcaactaatacagctgcaattatacagttaa |
104 |
Q |
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| T |
38006132 |
acatttatacatgccttaattatggtagatgcatgtagtcacaatcttaaatgcatgcagtagaaaatttcaactaatacagctgcaattatacagttaa |
38006231 |
T |
|
| Q |
105 |
gaatacctcaaaaacctttatattactctcataattgtggtttttgcgtatcacaatttaaaactatatatataagaaatgtaacataatgaacgaatta |
204 |
Q |
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| T |
38006232 |
gaatacctcaaaaacctttatattactctcataattgtggtttttgcgtatcacaatttaaaactatatatataagaaatgtaacataatgaacgaatta |
38006331 |
T |
|
| Q |
205 |
tttcgtttaagtttgtaaaattaaaaatttagaaatatatacatagcacttatgaaagaagggttgaatcaagtttataaatcaactaaccgacttgcat |
304 |
Q |
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| T |
38006332 |
cttcgtttaagtttgtaaaattaaaaatttagaaatatatacatagcacttatgaaagaagggttgaatcaagtttataaatcaactaaccgacttgcat |
38006431 |
T |
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| Q |
305 |
tttgctctaatttctatcatttcttttaaaagttgattattttttcccaccttgaatattagcnnnnnnntgcatgtaattggaccaag--tacatgcat |
402 |
Q |
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| T |
38006432 |
tttgctctaatttctatcatttcttttaaaagttgatt-----------------atattagcaaaaaaatgcatgtaattggaccaagtatacatgcat |
38006514 |
T |
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| Q |
403 |
ttattgttcgacgatctctttaacatttctcataaatagtattatatatttacaatctccgcgaacttac |
472 |
Q |
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| T |
38006515 |
ttattgttcgacgatctctttaacatttctcataaatagtattatatatttacaatccccgcgaacttac |
38006584 |
T |
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