View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0109-INSERTION-4 (Length: 721)

Name: NF0109-INSERTION-4
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0109-INSERTION-4
NF0109-INSERTION-4
[»] chr6 (1 HSPs)
chr6 (8-658)||(9984585-9985240)


Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 658
Target Start/End: Complemental strand, 9985240 - 9984585
Alignment:
Q  8 caataatcactggattgtctgcttcaattagtataatatcctcaaatgtgactttccttgcataaccatttcctccctgatttaaagaacacataaaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9985240 caataatcactggattgtctgcttcaattagtataatatcctcaaatgtgactttccttgcataaccatttcctccctgatttaaagaacacataaaaca 9985141  T
Q  108 ttaaagtgtttttagtcacaatttgagtgataggaatagcaaatttcacatgctaatgaggtat-ttaagtttgtgtttttccttcaattaaattagaca 206  Q
    |||||||||||||||||| ||| ||||||||| ||||||| | |||||||| | ||| |||||| |||||||| |||||||||||||||||||||| |||    
T  9985140 ttaaagtgtttttagtcataatgtgagtgatatgaatagctagtttcacataccaataaggtatcttaagtttttgtttttccttcaattaaattaaaca 9985041  T
Q  207 aagttttgggagtctttcgcaataagcccctcaaattg------atcaagttgtaactttcgatcgacatttttg-tgaataaaccctaatcggaccgta 299  Q
    | | |||||||||||||| |||||| ||||||||||||      |||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  9985040 a-gctttgggagtctttctcaataaacccctcaaattgcaattgatcaggttgtaattttcgatcgacatttttggtgaatcaaccctaatcggaccgta 9984942  T
Q  300 actcccggtgagtaattttccgacaatgtgagcaatttgaggggcttatagacatgtttttattgactctacatttcaataaggtatcttaagtttgtgt 399  Q
    ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9984941 actcccaatgagtaattttctgacaatgtgagcaatttgaggggcttatagacatgtttttattgactctacatttcaataaggtatcttaagtttgtgt 9984842  T
Q  400 ttttccttcatttaaattagacaaagctttgggagtctttatcaataagcccatcaaattgctcgattgatcatgtcataacttttgatcaacatttttg 499  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  9984841 ttttccttcaattaaattagacaaagctttgggagtctttatcaataagcccatcaaattgctcgattgatcatgtcgtaacttttgatcaatatttttg 9984742  T
Q  500 tgagtaaaccctaattgggtcgtaccagtgagtatttttctgaaattgtgtgcaatttgaggggcttatagacatgttttttattgactctacatttcaa 599  Q
    |||||||||||||||  |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |    
T  9984741 tgagtaaaccctaatcagaccgtaccagtgagtatttttctgaaattgtgagcaatttgaggggcttatagacatgt-ttttattgactctacatttc-a 9984644  T
Q  600 atttttctccaatagtgatattttctaaaagttacccaccttattagatctttatctcg 658  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9984643 atttttctccaatagtgatattttctaaaagctacccaccttattagatctttatctcg 9984585  T

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