View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0109-INSERTION-7 (Length: 587)
Name: NF0109-INSERTION-7
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109-INSERTION-7 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 303
Target Start/End: Complemental strand, 38850690 - 38850390
Alignment:
| Q |
4 |
aacacaggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaag |
103 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38850690 |
aacacaggggagctggttggtgattgaaaatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaag |
38850591 |
T |
|
| Q |
104 |
taaaagaagtagaagcatacattgnnnnnnnn-gttgagttagttaattagagcttgagggttgttggtatgttatctaagatagaggactatactatat |
202 |
Q |
| |
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| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850590 |
ttaaggaagtagaagtatacattgtttttttttgttgagttagttaattagagcttgagggttgttggtatgttatctaagatagaggactatactatat |
38850491 |
T |
|
| Q |
203 |
ataggttagtttatagaatatgatataggatatggtatcttgcttttattaaagtttgaatttaactattattataattagatcgcaatatgtttattta |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38850490 |
ataggttagtttatataatatgatataggatatggtatcttgcttttattaaagtttgaatttaactattattataatttgatcgcaatatgtttattta |
38850391 |
T |
|
| Q |
303 |
a |
303 |
Q |
| |
|
| |
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|
| T |
38850390 |
a |
38850390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 301 - 574
Target Start/End: Complemental strand, 38850220 - 38849955
Alignment:
| Q |
301 |
taacataacatgttggagggagtggcgcacagagtgaattatataaatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtat |
400 |
Q |
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||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850220 |
taacataacatgttggagggagtggcgcacagaatggattata--aatcttgaatgtggcagtaatacaaattaacaagtaccactacttggatccgtat |
38850123 |
T |
|
| Q |
401 |
catgatgttaatgtttttaatgatttggcaataacatattcgcacatagtgaattaataaccgcggaagacaagaatttttaagtcatggttttatcatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38850122 |
catgatgttaatgtttttaatgatttggcaataacatattcg--cagagtgaattaataaccgcggaagacaagaatttt--agtcatggttttatcatt |
38850027 |
T |
|
| Q |
501 |
aaaaagcgataccacttacttgcttgcatccatatcctgatttgttggatatcactactgtccactgtttcttt |
574 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
38850026 |
-aaaagcgataccacttacttgcttgcatccatatcttgatttgttggatatcactactgt-cactgtttcttt |
38849955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 38827456 - 38827576
Alignment:
| Q |
7 |
acaggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38827456 |
acaggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaa |
38827555 |
T |
|
| Q |
107 |
aagaagtagaagcatacattg |
127 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
38827556 |
aagaagtagaagcatacattg |
38827576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 38847053 - 38847154
Alignment:
| Q |
26 |
attgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacat |
125 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38847053 |
attgatgatcaactgggttttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacat |
38847152 |
T |
|
| Q |
126 |
tg |
127 |
Q |
| |
|
|| |
|
|
| T |
38847153 |
tg |
38847154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 38858992 - 38859094
Alignment:
| Q |
23 |
gtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcata |
122 |
Q |
| |
|
||||||||| ||||| ||| ||||| | |||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
38858992 |
gtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagctcatgtagaagtggtgaagtaaaagaagtagaagcata |
38859091 |
T |
|
| Q |
123 |
cat |
125 |
Q |
| |
|
||| |
|
|
| T |
38859092 |
cat |
38859094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 38861875 - 38861979
Alignment:
| Q |
23 |
gtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcata |
122 |
Q |
| |
|
||||||||| ||||| ||| ||||| | |||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||| |||||||||||||| |
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|
| T |
38861875 |
gtgattgatgatcaactgggttttgaatgagtaaccttcttgtgtgagattccacaagaagttcatggagaagtggtgaagtaaaggaagtagaagcata |
38861974 |
T |
|
| Q |
123 |
cattg |
127 |
Q |
| |
|
||||| |
|
|
| T |
38861975 |
cattg |
38861979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 38865306 - 38865403
Alignment:
| Q |
23 |
gtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagca |
120 |
Q |
| |
|
||||||||| |||||||| | ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||| |
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| T |
38865306 |
gtgattgatgttcaattgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagca |
38865403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 125
Target Start/End: Original strand, 38841243 - 38841359
Alignment:
| Q |
9 |
aggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaa |
108 |
Q |
| |
|
||||||| ||||| ||||||||| ||||| ||| ||||| | ||||||||||||| |||| ||||| ||||||||||||| || | | ||| |||||| |
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|
| T |
38841243 |
aggggagttggttagtgattgatgatcaactgggttttgaatgagtaaccttcttatgtgagattccacaagaagctcattgaatatttgtgtagtaaag |
38841342 |
T |
|
| Q |
109 |
gaagtagaagcatacat |
125 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
38841343 |
gaaatagaagcatacat |
38841359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 38859137 - 38859259
Alignment:
| Q |
147 |
taattagagcttgagggttgttggtatgttatctaagatagaggactatactatatataggttagtttatagaatatgatataggatatggtatcttgct |
246 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| | ||| |||||||| | ||| || ||||| |||||||||||||||||| | |
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|
| T |
38859137 |
taattagagcttgagggtttttggtatgttatcttagatagatg-----actttatataggatggttaat---atatggtataggatatggtatctttcc |
38859228 |
T |
|
| Q |
247 |
tttattaaagtttgaatttaactattattat |
277 |
Q |
| |
|
||| ||||||||||||||||| |||||||| |
|
|
| T |
38859229 |
ttttataaagtttgaatttaaccattattat |
38859259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 38862083 - 38862136
Alignment:
| Q |
228 |
taggatatggtatcttgcttttattaaagtttgaatttaactattattataatt |
281 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
38862083 |
taggatatagtatcttgcttttactaaagtttgagtttaactattattataatt |
38862136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 38827599 - 38827655
Alignment:
| Q |
140 |
agttagttaattagagcttgagggttgttggtatgttatctaagatagaggactata |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |
|
|
| T |
38827599 |
agttagttaattagagcttgagggttgttgttatattatcctagacagaggactata |
38827655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 38866092 - 38866139
Alignment:
| Q |
458 |
taaccgcggaagacaagaatttttaagtcatggttttatcattaaaaa |
505 |
Q |
| |
|
||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38866092 |
taaccacggaagacaagaattatttagtcatggttttatcattaaaaa |
38866139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 38841463 - 38841516
Alignment:
| Q |
228 |
taggatatggtatcttgcttttattaaagtttgaatttaactattattataatt |
281 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| ||||||| |
|
|
| T |
38841463 |
taggatatggtatcttgctttattaaaagtttgaatttaactattgctataatt |
38841516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 38865520 - 38865573
Alignment:
| Q |
228 |
taggatatggtatcttgctttta-ttaaagtttgaatttaactattattataat |
280 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| || ||||||| ||||||||| |
|
|
| T |
38865520 |
taggatatggtatcttgcttttatttaaagtttcaaattaactagtattataat |
38865573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 406
Target Start/End: Original strand, 38859874 - 38859914
Alignment:
| Q |
366 |
tacaaattaacaagtaccactacttggatccgtatcatgat |
406 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
38859874 |
tacaaattaacaagtaccactactggtatccgtatcgtgat |
38859914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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