View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0109_high_2 (Length: 247)
Name: NF0109_high_2
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47946631 - 47946399
Alignment:
| Q |
1 |
acaaatgtaaccactagtagctggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataa |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47946631 |
acaaatgtaaccgctagtagctggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataa |
47946532 |
T |
|
| Q |
101 |
acgttccttttgatctaaaggaaaataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47946531 |
acgttccttttgatctaaa-gaaaataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaa |
47946433 |
T |
|
| Q |
201 |
tgtttcacacatacattcaaccttcttcctgttc |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
47946432 |
tgtttcacacatacattcaaccttcttcctgttc |
47946399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47952061 - 47951829
Alignment:
| Q |
1 |
acaaatgtaaccactagtagctggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47952061 |
acaaatgtaaccgctagtagctggcaccaccaaacatattcatataaatcataaatgatatgaggtactgagtaaatcacacatttgttttaaatcataa |
47951962 |
T |
|
| Q |
101 |
acgttccttttgatctaaaggaaaataatctagacaaaacaattcttaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47951961 |
acgttccttttgatctaaa-gaaaataatctagacaaaacaattattaagcattgaacaaagaattatttgttgagccaacgtggatccaacagtagcaa |
47951863 |
T |
|
| Q |
201 |
tgtttcacacatacattcaaccttcttcctgttc |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
47951862 |
tgtttcacacatacattcaaccttcttcctgttc |
47951829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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