View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0109_low_2 (Length: 424)
Name: NF0109_low_2
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 31 - 413
Target Start/End: Complemental strand, 13891412 - 13891030
Alignment:
| Q |
31 |
aagatgcacataatcaattcaaaaactatactatcaacctccattacagtcannnnnnncctcccaaaatctatctatgcaaaacattttctaacaacaa |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13891412 |
aagatgcacataatcaattcaaaaactatactatcaacctccatcacagtcatttttttcctcccaaaatctatctatgcaaaacattttctaacaacaa |
13891313 |
T |
|
| Q |
131 |
cactacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13891312 |
cactacacacttcttgcctatatcattaaccaaagaacaacaaaaactttcattcaacatttctatcatcatccattaaacctcaccccaacaaagacat |
13891213 |
T |
|
| Q |
231 |
catcagcaccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgtcattctgttcacaacactcttcct |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13891212 |
catcagcaccttcagtaaactccaattcacaatcctttccatccaaacccaaatcattaccaaaatcaaatcttgttattctgttcacaacactcttcct |
13891113 |
T |
|
| Q |
331 |
tgccacagtcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13891112 |
tgccacagtcttaaccctcatctttcgtttatcgtttccttgcgctgtttccactgtttgattcaccttctcaaaaccttcat |
13891030 |
T |
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