View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0109_low_3 (Length: 416)
Name: NF0109_low_3
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0109_low_3 |
 | |
|
| [»] chr4 (8 HSPs) |
| |
|
| [»] scaffold0009 (2 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 61 - 416
Target Start/End: Original strand, 22990246 - 22990603
Alignment:
| Q |
61 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
157 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990246 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22990344 |
T |
|
| Q |
158 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990345 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
22990444 |
T |
|
| Q |
258 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990445 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22990544 |
T |
|
| Q |
358 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22990545 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcag |
22990603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 61 - 416
Target Start/End: Complemental strand, 22714979 - 22714622
Alignment:
| Q |
61 |
taagctaggaagtactatgaattaagaagtaatctaagctaggat--gta-ctatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgt |
157 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | || || ||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714979 |
taagataggatgtactatgaattaagaagtaatctagga-agtattagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgt |
22714881 |
T |
|
| Q |
158 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22714880 |
ctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactat |
22714781 |
T |
|
| Q |
258 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714780 |
gaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcactta |
22714681 |
T |
|
| Q |
358 |
tgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
| ||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22714680 |
ttttgtttttttgcttcggatttgttgttcacttatcctccataaactctatatttcag |
22714622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 61 - 416
Target Start/End: Complemental strand, 28949236 - 28948879
Alignment:
| Q |
61 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949236 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
28949137 |
T |
|
| Q |
159 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28949136 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaaaaagtgctagtaactatg |
28949037 |
T |
|
| Q |
259 |
aagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
358 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949036 |
aagtactcttatgaagtacaaataacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttat |
28948937 |
T |
|
| Q |
359 |
gttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
28948936 |
gttgtttttttgcttcggatttgttgttcacttatcctccttaaactctatatttcag |
28948879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 362
Target Start/End: Original strand, 22696864 - 22697172
Alignment:
| Q |
56 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
153 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| | || | ||||||||||| | || |||||||||||||||||||||||| || | |
|
|
| T |
22696864 |
ggaattaacctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactattttgtttagtctttaatgttgtaatgctctg |
22696963 |
T |
|
| Q |
154 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22696964 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
22697063 |
T |
|
| Q |
254 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
353 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22697064 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgctcgtatttatggttca |
22697163 |
T |
|
| Q |
354 |
cttatgttg |
362 |
Q |
| |
|
||||||||| |
|
|
| T |
22697164 |
cttatgttg |
22697172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 41 - 362
Target Start/End: Original strand, 46956533 - 46956859
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtt---tagtctt |
135 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || | ||||||||| | |||||| || ||||||| |
|
|
| T |
46956533 |
gaacctgtgtgactaggaagtaagctagaaagtactatgaattaagaagtaatctaggaagtactagtaactatgaagcactgttatattatttagtctt |
46956632 |
T |
|
| Q |
136 |
taatgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaa |
235 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46956633 |
taatgttgtaatgttccattatctttaaattaagaagtaatctaggaagtactagtaactatcaagtactgttatgttttgccttttaattaggaagtaa |
46956732 |
T |
|
| Q |
236 |
tctaagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
46956733 |
tctaagaagtgctagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctataccttaatgaaggcttatgttgtgtgataattat |
46956832 |
T |
|
| Q |
336 |
gctcgtatttttggttcacttatgttg |
362 |
Q |
| |
|
||| |||||||| |||||||||||||| |
|
|
| T |
46956833 |
gcttgtattttttgttcacttatgttg |
46956859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 28949290 - 28949216
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
115 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
28949290 |
gaacctatgtgactaggaagtaagctaggaagtactatgagttaagaagcaatctaagctaggatgtactatgaa |
28949216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 22715033 - 22714959
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
115 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22715033 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22714959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 22990192 - 22990266
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
115 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22990192 |
gaacctctgtgattaggaagtaagttaggaagtactatgaattaagaagtaatctaagataggatgtactatgaa |
22990266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 61 - 416
Target Start/End: Complemental strand, 200862 - 200495
Alignment:
| Q |
61 |
taagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtc |
158 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200862 |
taagctaggatgtactatgaattaagaagtaatctaggaagtaatagtaactatgaagtactgttatgtttagtctttaatgttgtaatgttccgttgtc |
200763 |
T |
|
| Q |
159 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtact----------gttatgttttgcctttcaattaggaagtaatctaagaagtgct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
200762 |
tttaaattaagaagtaatctaggaagtacctgtaactatgaagtactatgaagtactgttatgtttttcctttcaattaggaattaatctaagaagtgct |
200663 |
T |
|
| Q |
249 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200662 |
agtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaatgaaagcttatgttgtgtgataattatgctcgtatttttg |
200563 |
T |
|
| Q |
349 |
gttcacttatgttgnnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
200562 |
gttcacttattttgtttttttgcttcggatttgttgttcacttatcctccataaactatatatttcag |
200495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 200916 - 200842
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
115 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200916 |
gaacctctgtgattaggaagtaagctaggaagtactatgaattaagaagtaatctaagctaggatgtactatgaa |
200842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 41 - 416
Target Start/End: Original strand, 20087585 - 20087963
Alignment:
| Q |
41 |
gaacctgtgtgactaggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaa |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | || | ||||||||||| |||||| |||||||||||| |
|
|
| T |
20087585 |
gaacttgtgtgactaggaagtaagctaggaagtcttatgaattaagaagtaatctaggaagtactagtaactatgaagtactgttatatttagtctttaa |
20087684 |
T |
|
| Q |
139 |
tgttgtaatgttccgttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatct |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20087685 |
tgttgtaatgttccgttatctttaaattaagaagtaatctagaaagtactagtaactatgaagtactgttatgttttgccttttaattaggaagtaatct |
20087784 |
T |
|
| Q |
239 |
aagaagtgctagtaactatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgct |
338 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
20087785 |
aagaagtactagtaactatgaagtactattatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgct |
20087884 |
T |
|
| Q |
339 |
cgtatttttggttcacttatgttg-nnnnnnngcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||| | | |||||||||| ||||||||||||| |
|
|
| T |
20087885 |
tgtatttttggttcacttatgttgttttttttccttcagatttgttgttcacctgtcctccataagctctatatttcag |
20087963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 362
Target Start/End: Original strand, 19646298 - 19646606
Alignment:
| Q |
56 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
153 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| | ||||||||| |||||||||||||||||||| | |
|
|
| T |
19646298 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactcttatgtttaatctttaatgttgtaatgttctg |
19646397 |
T |
|
| Q |
154 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19646398 |
ttgtctttaaattaagaagtaatctaggaagtaccggtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
19646497 |
T |
|
| Q |
254 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19646498 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatatttctatcccttaatgaagacttatgttgtgtgataattatgcttgtatttttggttca |
19646597 |
T |
|
| Q |
354 |
cttatgttg |
362 |
Q |
| |
|
||||||||| |
|
|
| T |
19646598 |
cttatgttg |
19646606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 362
Target Start/End: Original strand, 4344211 - 4344518
Alignment:
| Q |
56 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
153 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| | || | ||||||||||| ||||||||||||||||||||||| ||||||| || |
|
|
| T |
4344211 |
ggaattaagctaggaagtactatgaattaagaagtaatctacgaagtactagtaactatgaagtactgttatgtttagtctttaatgtt-taatgtttcg |
4344309 |
T |
|
| Q |
154 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4344310 |
ttgtctttaaattaagaagtaatctaggaagtaccagtaactttgaagtattgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaa |
4344409 |
T |
|
| Q |
254 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
353 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
4344410 |
ctatgaagtactcttatgaagtactagtaacttatgtaatgtttctatcccttaatgaagacttatgttgtgtgataattatgcttgtattttttgttca |
4344509 |
T |
|
| Q |
354 |
cttatgttg |
362 |
Q |
| |
|
||||||||| |
|
|
| T |
4344510 |
cttatgttg |
4344518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 416
Target Start/End: Original strand, 5928144 - 5928190
Alignment:
| Q |
370 |
gcttcggatttgttgttctcttatcctccataaactctatatttcag |
416 |
Q |
| |
|
||||| |||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
5928144 |
gcttcagatttgttgtgcacttatcctcaataaactctatatttcag |
5928190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 56 - 362
Target Start/End: Original strand, 22808084 - 22808392
Alignment:
| Q |
56 |
ggaagtaagctaggaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
153 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808084 |
ggaattaagctaggaagtactataaattaagaagtaatctatgaagtactagtaactatgaagtattgttatgtttagtctttaatgttgtaatgttccg |
22808183 |
T |
|
| Q |
154 |
ttgtctttaaattaagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaa |
253 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | |||||||||||||||||||||||||||| |||||| |
|
|
| T |
22808184 |
ttatctttaaattaagaagtaatctaggaagtactagtaactatgaagtactattatatttttcttttcaattaggaagtaatctaagaagtggtagtaa |
22808283 |
T |
|
| Q |
254 |
ctatgaagtactcttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttca |
353 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22808284 |
ccatgaagtactcttatgaagtactagtaacttatgtaatttttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttca |
22808383 |
T |
|
| Q |
354 |
cttatgttg |
362 |
Q |
| |
|
||||||||| |
|
|
| T |
22808384 |
cttatgttg |
22808392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 69 - 362
Target Start/End: Complemental strand, 23362651 - 23362369
Alignment:
| Q |
69 |
gaagtactatgaattaagaagtaatctaagc--taggatgtactatgaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362651 |
gaagtactatgaattaagaagtaatctacgaagtactagtaactattaagtattgttatgtttagtctttaatgttgtaatgttccgttgtctttaaatt |
23362552 |
T |
|
| Q |
167 |
aagaagtaatctaggaagtacctgtaactatgaagtactgttatgttttgcctttcaattaggaagtaatctaagaagtgctagtaactatgaagtactc |
266 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
23362551 |
aagaagtaatctaggaagtactaataactatgaagtactgttatgtttttcctttcaattaggaagtaatctaagaagtggtagtaaccatgaagtact- |
23362453 |
T |
|
| Q |
267 |
ttatgaagtaccagtaacttatgtaatgtttctatcccttaacgaaagcttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
362 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23362452 |
------------agtaacttatgtaatgtttttatcccttaatgaagacttatgttgtgtgataattatgctcgtatttttggttcacttatgttg |
23362369 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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