View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0109_low_4 (Length: 345)

Name: NF0109_low_4
Description: NF0109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0109_low_4
NF0109_low_4
[»] chr8 (31 HSPs)
chr8 (1-150)||(22272330-22272480)
chr8 (225-333)||(22270242-22270350)
chr8 (142-233)||(22270851-22270942)
chr8 (1-146)||(8609787-8609931)
chr8 (1-146)||(13282478-13282622)
chr8 (1-102)||(41825644-41825745)
chr8 (1-91)||(38547282-38547372)
chr8 (1-103)||(41042584-41042686)
chr8 (1-143)||(26242314-26242455)
chr8 (1-108)||(7745112-7745219)
chr8 (1-143)||(42941777-42941918)
chr8 (1-91)||(13108336-13108426)
chr8 (1-88)||(13486099-13486186)
chr8 (1-91)||(9673165-9673255)
chr8 (1-79)||(40339680-40339758)
chr8 (1-145)||(5036446-5036593)
chr8 (19-148)||(27691152-27691280)
chr8 (1-149)||(33708804-33708950)
chr8 (8-67)||(15145749-15145808)
chr8 (28-146)||(26238726-26238843)
chr8 (56-146)||(42943426-42943515)
chr8 (20-79)||(15305863-15305922)
chr8 (20-79)||(15486232-15486291)
chr8 (5-70)||(44526694-44526759)
chr8 (56-146)||(5038062-5038150)
chr8 (56-146)||(22273891-22273980)
chr8 (10-89)||(462359-462438)
chr8 (56-143)||(9671980-9672066)
chr8 (20-69)||(27406916-27406965)
chr8 (30-71)||(44528149-44528190)
chr8 (9-89)||(37526011-37526091)
[»] chr1 (27 HSPs)
chr1 (1-108)||(51896132-51896239)
chr1 (1-146)||(2869579-2869723)
chr1 (1-146)||(27087283-27087427)
chr1 (1-146)||(25278348-25278492)
chr1 (1-146)||(3013450-3013600)
chr1 (1-148)||(37344340-37344486)
chr1 (1-146)||(31238475-31238619)
chr1 (2-108)||(50556078-50556184)
chr1 (1-79)||(6818658-6818736)
chr1 (1-91)||(15104495-15104585)
chr1 (1-146)||(4855946-4856090)
chr1 (1-146)||(34778118-34778262)
chr1 (1-146)||(46583536-46583680)
chr1 (9-143)||(33602632-33602765)
chr1 (43-146)||(25278975-25279077)
chr1 (56-146)||(31236819-31236908)
chr1 (1-143)||(52643600-52643736)
chr1 (20-91)||(47013081-47013152)
chr1 (8-89)||(51121961-51122042)
chr1 (65-146)||(25278854-25278934)
chr1 (26-146)||(26223587-26223706)
chr1 (20-89)||(9121667-9121736)
chr1 (56-105)||(51894607-51894656)
chr1 (116-150)||(37346021-37346055)
chr1 (8-62)||(43868697-43868751)
chr1 (56-143)||(3011858-3011944)
chr1 (20-72)||(1442594-1442646)
[»] chr5 (21 HSPs)
chr5 (2-146)||(8539675-8539818)
chr5 (1-150)||(7267839-7267987)
chr5 (1-146)||(17574318-17574462)
chr5 (1-146)||(34327635-34327779)
chr5 (1-147)||(36057593-36057738)
chr5 (1-89)||(30468260-30468348)
chr5 (1-146)||(2179787-2179931)
chr5 (1-143)||(18624988-18625129)
chr5 (56-146)||(30463900-30463989)
chr5 (20-91)||(40780604-40780675)
chr5 (39-91)||(24541230-24541282)
chr5 (56-103)||(28813765-28813812)
chr5 (20-91)||(29621780-29621851)
chr5 (19-146)||(2854325-2854450)
chr5 (54-91)||(43492131-43492168)
chr5 (56-146)||(12738736-12738825)
chr5 (56-146)||(12801559-12801648)
chr5 (10-89)||(18728591-18728670)
chr5 (10-89)||(32087570-32087649)
chr5 (20-69)||(42473606-42473655)
chr5 (14-74)||(15459182-15459242)
[»] chr3 (35 HSPs)
chr3 (1-146)||(23293170-23293314)
chr3 (3-146)||(21348723-21348865)
chr3 (1-146)||(27899081-27899225)
chr3 (1-146)||(53190759-53190903)
chr3 (1-147)||(30599918-30600063)
chr3 (1-146)||(2226152-2226296)
chr3 (1-146)||(46112487-46112631)
chr3 (1-90)||(42279562-42279651)
chr3 (1-90)||(43765192-43765281)
chr3 (1-105)||(35905712-35905816)
chr3 (8-146)||(54898437-54898574)
chr3 (1-146)||(51684610-51684754)
chr3 (1-91)||(17515364-17515454)
chr3 (1-108)||(48830806-48830912)
chr3 (1-91)||(19987594-19987684)
chr3 (1-71)||(44276196-44276266)
chr3 (1-105)||(46197760-46197864)
chr3 (1-146)||(41977750-41977894)
chr3 (1-91)||(2377083-2377173)
chr3 (1-67)||(7884873-7884939)
chr3 (11-91)||(2660266-2660346)
chr3 (1-91)||(3152218-3152308)
chr3 (10-67)||(54092764-54092821)
chr3 (1-91)||(44794261-44794351)
chr3 (8-73)||(5133068-5133133)
chr3 (28-146)||(30598337-30598454)
chr3 (56-143)||(42282473-42282559)
chr3 (1-49)||(600805-600853)
chr3 (29-89)||(23774208-23774268)
chr3 (56-103)||(46114105-46114152)
chr3 (26-105)||(54412517-54412596)
chr3 (8-62)||(5125884-5125938)
chr3 (8-62)||(41623735-41623789)
chr3 (21-70)||(23888772-23888821)
chr3 (116-153)||(41979411-41979448)
[»] chr6 (18 HSPs)
chr6 (1-105)||(20523406-20523510)
chr6 (1-108)||(10568436-10568543)
chr6 (1-105)||(32439071-32439175)
chr6 (1-105)||(7372938-7373042)
chr6 (1-146)||(13613562-13613706)
chr6 (1-146)||(32516877-32517021)
chr6 (1-91)||(9398714-9398804)
chr6 (1-146)||(6899485-6899629)
chr6 (1-145)||(11355223-11355366)
chr6 (1-67)||(7049835-7049901)
chr6 (56-146)||(9400035-9400124)
chr6 (1-89)||(14338455-14338543)
chr6 (20-91)||(3456802-3456873)
chr6 (5-70)||(11163875-11163940)
chr6 (22-89)||(3018433-3018500)
chr6 (8-71)||(30891198-30891261)
chr6 (20-91)||(32455890-32455961)
chr6 (16-66)||(25172104-25172154)
[»] chr2 (27 HSPs)
chr2 (1-146)||(16763076-16763220)
chr2 (1-108)||(40560260-40560367)
chr2 (1-146)||(19908246-19908391)
chr2 (1-142)||(42519205-42519346)
chr2 (1-105)||(16377197-16377301)
chr2 (1-146)||(2766934-2767078)
chr2 (1-146)||(39664748-39664892)
chr2 (1-91)||(44709745-44709835)
chr2 (1-79)||(17696272-17696350)
chr2 (1-146)||(14389084-14389228)
chr2 (1-91)||(6797561-6797651)
chr2 (1-91)||(39455223-39455313)
chr2 (8-89)||(7744099-7744180)
chr2 (39-146)||(19581414-19581520)
chr2 (20-105)||(37020548-37020633)
chr2 (11-79)||(6785991-6786059)
chr2 (16-67)||(62815-62866)
chr2 (20-79)||(24208061-24208120)
chr2 (1-108)||(37645524-37645631)
chr2 (5-70)||(15807903-15807968)
chr2 (5-70)||(32608051-32608116)
chr2 (11-67)||(4416947-4417003)
chr2 (10-89)||(29909649-29909728)
chr2 (16-62)||(13999890-13999936)
chr2 (8-89)||(17946150-17946231)
chr2 (55-108)||(37646477-37646530)
chr2 (30-70)||(15806187-15806227)
[»] chr7 (29 HSPs)
chr7 (1-105)||(45359376-45359480)
chr7 (1-146)||(37115506-37115650)
chr7 (1-91)||(6602389-6602479)
chr7 (1-146)||(39859209-39859353)
chr7 (1-104)||(35693350-35693455)
chr7 (1-146)||(47386189-47386333)
chr7 (1-91)||(34776895-34776985)
chr7 (1-89)||(30940405-30940493)
chr7 (1-103)||(13168162-13168267)
chr7 (1-91)||(24228389-24228479)
chr7 (1-105)||(38474123-38474227)
chr7 (1-146)||(29996494-29996638)
chr7 (10-89)||(37796170-37796249)
chr7 (1-89)||(48852327-48852415)
chr7 (19-146)||(27666063-27666189)
chr7 (1-91)||(56384-56474)
chr7 (56-146)||(13169683-13169772)
chr7 (8-67)||(6056844-6056903)
chr7 (20-91)||(20478096-20478167)
chr7 (10-89)||(33038786-33038865)
chr7 (26-105)||(48227911-48227990)
chr7 (1-67)||(23906241-23906307)
chr7 (30-67)||(31915047-31915084)
chr7 (56-143)||(39857648-39857734)
chr7 (8-72)||(23962377-23962441)
chr7 (8-67)||(31913547-31913606)
chr7 (8-89)||(1546343-1546424)
chr7 (56-105)||(6605397-6605446)
chr7 (22-78)||(13018102-13018158)
[»] chr4 (18 HSPs)
chr4 (1-155)||(41781530-41781683)
chr4 (1-92)||(51011979-51012070)
chr4 (1-103)||(42980677-42980779)
chr4 (1-89)||(41761726-41761814)
chr4 (1-147)||(48813786-48813931)
chr4 (1-91)||(49523178-49523268)
chr4 (1-102)||(35404425-35404526)
chr4 (1-102)||(48646727-48646828)
chr4 (19-147)||(43519423-43519550)
chr4 (8-143)||(11601674-11601807)
chr4 (1-89)||(52868129-52868217)
chr4 (1-67)||(26296874-26296940)
chr4 (64-146)||(48645255-48645336)
chr4 (8-67)||(44972489-44972548)
chr4 (11-69)||(13450970-13451028)
chr4 (1-89)||(2693233-2693320)
chr4 (16-67)||(50131240-50131291)
chr4 (56-92)||(20493880-20493916)
[»] scaffold1454 (1 HSPs)
scaffold1454 (1-79)||(1329-1407)
[»] scaffold0058 (2 HSPs)
scaffold0058 (1-146)||(3294-3438)
scaffold0058 (1-146)||(4466-4610)
[»] scaffold0564 (1 HSPs)
scaffold0564 (1-150)||(8258-8404)
[»] scaffold0129 (2 HSPs)
scaffold0129 (8-67)||(4537-4596)
scaffold0129 (30-67)||(6035-6072)
[»] scaffold0092 (2 HSPs)
scaffold0092 (5-70)||(36834-36899)
scaffold0092 (30-70)||(34674-34714)
[»] scaffold0204 (2 HSPs)
scaffold0204 (8-67)||(30458-30517)
scaffold0204 (30-67)||(28419-28456)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-67)||(37282-37348)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 22272480 - 22272330
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||    
T  22272480 tcatcaccactaacggagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcagggacgaat 22272381  T
Q  101 ttgactga-nnnnnnnaaaattcaagaacgaatttgaggtattagtcctaa 150  Q
    ||||||||        |||||||||  ||||||||||||||||||||||||    
T  22272380 ttgactgattttttttaaaattcaaagacgaatttgaggtattagtcctaa 22272330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 22270350 - 22270242
Alignment:
Q  225 aaaaagaaaagaaaaggcattttaaataaacgagagcataggaacgttaacccaaaattcaaattcaaatttcatttgcatcgctcccctccttttcccc 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||     
T  22270350 aaaaagaaaagaaaaggcattttaaataaacgagagcataggaacgttaacccaaaattcaaattcaaatttcattttgatcgctcccctccttttccct 22270251  T
Q  325 tctcttctc 333  Q
    |||||||||    
T  22270250 tctcttctc 22270242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 22270942 - 22270851
Alignment:
Q  142 tagtcctaattataatttgaaagttatacctaccaacgcaataaaaaacgtagagacggacggcaggtgaaaataagcacatgaaaaagaaa 233  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22270942 tagtcctaattataatttgaaagttatacctaacaacgcaataaaaaacgtagagatggacggcaggtgaaaataagcacatgaaaaagaaa 22270851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8609787 - 8609931
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  8609787 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 8609886  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||||||||||||||||||||||||    
T  8609887 ttggccga-ttttttaaaattcaagaacgaatttgaggtattagtc 8609931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 13282622 - 13282478
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  13282622 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 13282523  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  13282522 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 13282478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 41825644 - 41825745
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| |||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  41825644 tcatcactactaacagagcttttggacggagtgaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaat 41825743  T
Q  101 tt 102  Q
    ||    
T  41825744 tt 41825745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 38547372 - 38547282
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  38547372 tcatcaccactaacggagcttttggatggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattca 38547282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 41042584 - 41042686
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||| | |||||||||  |||||||    
T  41042584 tcatcaccactaacggagcttttggacggagggaccattttgatggacgcctgtaaaattcagggactaaatagatatttcacaaaattcagggacaaat 41042683  T
Q  101 ttg 103  Q
    |||    
T  41042684 ttg 41042686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 26242314 - 26242455
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |  ||| |||    
T  26242314 tcatcgccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaatttagggacgaat 26242413  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    ||| ||||       |||||||||||||||| |||||||||||    
T  26242414 ttggctga-tttttgaaaattcaagaacgaaattgaggtatta 26242455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 7745112 - 7745219
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||| ||||| |||||||||||  ||| |||    
T  7745112 tcatcaccactaacggagcttttggatggagggaccattttgatggatgtctgtaaaatacagggactaaataaatatttcgcaaaattcagagacgaat 7745211  T
Q  101 ttgactga 108  Q
    ||| ||||    
T  7745212 ttggctga 7745219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 42941918 - 42941777
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||| |||||||| ||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||| ||||| | |||||||||  ||| |||    
T  42941918 tcatctccactaacggagattttggacggagggactattttgatggacatctgtaaaattcagggactaaataaatatttctcaaaattcagggacgaat 42941819  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    ||| ||||       |||||||||| |||||||||||||||||    
T  42941818 ttggctga-ttttttaaaattcaaggacgaatttgaggtatta 42941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 13108336 - 13108426
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||||||||||  |||||||||| |||||||| |||||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  13108336 tcatcaccactaacgaagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattca 13108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 13486099 - 13486186
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaat 88  Q
    ||||||| |||||  |||||||||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  13486099 tcatcactactaatggagcttttggacagagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaat 13486186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 9673165 - 9673255
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||||||||||  ||||||| || |||||||| |||||||||||||| ||||||||||||||| |||||||||||| | |||||||||    
T  9673165 tcatcaccactaacgaagcttttagacggagggaccattttgatggacgtctgtaaaattcagggattaaatagatatttcacaaaattca 9673255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 40339680 - 40339758
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||||| | ||||||||||| ||||||||||||||||    
T  40339680 tcatcactactaacggagcttttggatgaagggaccattttgatggacatctgtaaaattcatggactaaatagatatt 40339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5036593 - 5036446
Alignment:
Q  1 tcatcaccactaacagagcttt----tggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgac 96  Q
    |||||| |||||||||||||||    |||| |||| ||| |||||||| ||||| ||||||||||| |||||||||||||||| | |||||||||  |||    
T  5036593 tcatcatcactaacagagctttaatttggacggagagaccattttgatagacgtctgtaaaattcaaggactaaatagatatttcacaaaattcagggac 5036494  T
Q  97 aaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagt 145  Q
     |||||||| ||       |||||| ||| |||||||||||||||||||    
T  5036493 gaatttgacgga-ttttttaaaatttaaggacgaatttgaggtattagt 5036446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 27691280 - 27691152
Alignment:
Q  19 cttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaa 118  Q
    |||||||| ||||||||   |||||||||||| ||||||||||||||||||| | |||||| |||||||||||  ||| || ||| | ||       |||    
T  27691280 cttttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccga-tttttcaaa 27691182  T
Q  119 attcaagaacgaatttgaggtattagtcct 148  Q
    ||||||| ||||||||||||||||||||||    
T  27691181 attcaaggacgaatttgaggtattagtcct 27691152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 33708804 - 33708950
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| | |||| || |||||||| ||||||||   |||||||||||||||||||||||||||||||| |  ||||| |||||||||||  ||| ||     
T  33708804 tcatcactattaacggaccttttggacggagggacagatttgatggacgtttgtaaaattcagggactaatttaatatttcgcaaaattcagggacgaaa 33708903  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtccta 149  Q
    ||||| |        |||||||||| | |||||||||||||||||||||    
T  33708904 ttgaccg--ttttttaaaattcaaggatgaatttgaggtattagtccta 33708950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 15145749 - 15145808
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||||||| |||||| ||| ||||||||||||| ||||||||| ||||||||||||    
T  15145749 cactaacagagcatttggacggaaggactattttgatcgacgtttgttaaattcagggac 15145808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 26238843 - 26238726
Alignment:
Q  28 ggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaa 127  Q
    |||||||||  |||||||||| |||   ||||||  |||||||||||||||| |||||||||||  ||| |||||| ||||       |||||||||| |    
T  26238843 ggagggactgatttgatggacattttgtaaattcgaggactaaatagatatttcgcaaaattcagggacgaatttggctga-tttttgaaaattcaagga 26238745  T
Q  128 cgaatttgaggtattagtc 146  Q
    |||||||||||||||||||    
T  26238744 cgaatttgaggtattagtc 26238726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 42943426 - 42943515
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||||||||||| |||||||||||  ||| |||||| | ||       |||||||||| ||||||||||||||||||||    
T  42943426 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 42943515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 15305922 - 15305863
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||||||| | ||||||    
T  15305922 ttttggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatt 15305863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 15486291 - 15486232
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||||||| | ||||||    
T  15486291 ttttggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatt 15486232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 44526759 - 44526694
Alignment:
Q  5 caccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    ||||||||||||||| |||| | ||| |||||| |||||| | ||||||| |||||||||||||||    
T  44526759 caccactaacagagcatttgaacggaaggactaatttgattggcgtttgttaaattcagggactaa 44526694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 5038062 - 5038150
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||||||||||||| |||| ||||||||||||  || |||||||| ||       |||||||||| ||||||||||||||||||||    
T  5038062 aaattcagggactaaatagctatttcgcaaaattcaagaacgaatttgaccga-ttttttaaaattcaag-acgaatttgaggtattagtc 5038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 22273891 - 22273980
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||||||||||||||||||  ||||||||||  |||||||||| | ||       |||||||||| || |||||||||||||||||    
T  22273891 aaattcagggactaaatagatattttgcaaaattcagagacaaatttggccga-ttttttaaaattcaaggacaaatttgaggtattagtc 22273980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 462359 - 462438
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||  |||||||||||||   ||||||||||||||||  ||||||| ||||||| | |||||| |||| ||||    
T  462359 ctaacagagcacttggatggagggatctttttgatggacgtttgacaaattcaaggactaagttgatatttcgcataatt 462438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 9672066 - 9671980
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    |||||| ||||||||||||||||| |||||||||||  ||| ||||||| |||       |||||||||| |||||||| ||||||||    
T  9672066 aaattcggggactaaatagatatttcgcaaaattcatggacgaatttgattga-ttggtgaaaattcaaggacgaatttaaggtatta 9671980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 27406916 - 27406965
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggacta 69  Q
    ||||||| |||| ||||  |||||||||||| ||||||||||||||||||    
T  27406916 ttttggacggagagactgatttgatggacgtctgtaaaattcagggacta 27406965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 44528149 - 44528190
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggactaaa 71  Q
    |||||||| |||||| ||||||||| ||||||||||||||||    
T  44528149 agggactaatttgattgacgtttgttaaattcagggactaaa 44528190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 37526011 - 37526091
Alignment:
Q  9 actaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||||| ||  ||||| ||||||||  |||||||||| || || |||||||||||||||| | |||||| |||| ||||    
T  37526011 actaacagcgcacttggacggagggacctttttgatggatgtctgaaaaattcagggactaagttgatatttcgcataatt 37526091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 51896132 - 51896239
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||  |||||||    
T  51896132 tcatcaccactaacagagcttttggacggagggactattttgatggacatctgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaat 51896231  T
Q  101 ttgactga 108  Q
    ||||||||    
T  51896232 ttgactga 51896239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2869723 - 2869579
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||||||||  ||| |||    
T  2869723 tcatcaccactaacagagcttttggacggagggaccattttgatggacgtctgtaaaatttagagactaaatagatatttcgcaaaattcagggacgaat 2869624  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  2869623 ttgaccga-tttttgaaaattcaaggacgaatttgaggtattagtc 2869579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 27087427 - 27087283
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  27087427 tcatcaccactaacggagcttttggacggatgggccattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaat 27087328  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||| ||| ||||||||||||||||||||    
T  27087327 ttgaccga-ttttttaaaatttaaggacgaatttgaggtattagtc 27087283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 25278348 - 25278492
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||  ||| |||    
T  25278348 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtatgtaaaattcaaggactaaataggtatttcgcaaaattcagggacgaat 25278447  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  25278448 ttgaccga-ttttttaaaattcaaggacgaatttgaggtattagtc 25278492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 3013450 - 3013600
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatg------gacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatg 94  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||      ||||| |||||||||||||||||||||||||||| |||||||||||  |    
T  3013450 tcatcaccactaacggagcttttggacggagggactattttgatgtccatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcatgg 3013549  T
Q  95 acaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    || |||||||||||       |||||||||| ||||||||||||||||||||    
T  3013550 acgaatttgactga-tgttttaaaattcaaggacgaatttgaggtattagtc 3013600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 37344486 - 37344340
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||  |||||||||| |||| |||||||||||  ||| |||    
T  37344486 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtatgtaaaattcaaagactaaataggtatttcgcaaaattcagggacgaat 37344387  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcct 148  Q
    ||||| ||       |||||||||| ||||||||||||||||||||||    
T  37344386 ttgaccga-ttttttaaaattcaaggacgaatttgaggtattagtcct 37344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 31238475 - 31238619
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| |||||||||||  || |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  |||||||    
T  31238475 tcatcaccactaacggagcttttggacagatggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacaaat 31238574  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| || |||||||||||||||||    
T  31238575 ttggccga-ttttttaaaattcaaggacaaatttgaggtattagtc 31238619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 50556078 - 50556184
Alignment:
Q  2 catcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatt 101  Q
    ||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||  ||| ||||    
T  50556078 catcaccactaacggagcttttggacggagggaccattttgatagacgtctgtaaaatttagggactaaatagatatttcgcaaaattcagagacgaatt 50556177  T
Q  102 tgactga 108  Q
    |||||||    
T  50556178 tgactga 50556184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6818658 - 6818736
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  6818658 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatt 6818736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 15104585 - 15104495
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||  ||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  15104585 tcatcaccactaatggagcttttggacggaaggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattca 15104495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 4855946 - 4856090
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||| |||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| | |||||| |||||||||||  |||  ||    
T  4855946 tcatcaccattaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtat 4856045  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  4856046 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 4856090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 34778118 - 34778262
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||||||||||| | |||||| |||||||||||  |||  ||    
T  34778118 tcatcaccactaacggagcttttggacggagggaccattttgatggacatctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtat 34778217  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  34778218 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 34778262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 46583536 - 46583680
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||| |||| || |||||||| |||||||| | |||||||||||| ||||||||||||||||||| | |||||| |||||||||||  ||||||     
T  46583536 tcatcaccattaacggaccttttggacggagggacaaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaa 46583635  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  46583636 ttgaccga-tttttcaaaattcaaggacgaatttgaggtattagtc 46583680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 33602632 - 33602765
Alignment:
Q  9 actaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactga 108  Q
    |||||| || |||||||| |||||||||| ||||| |||||| ||||||||||||||||||| | |||||| | |||||||||  ||| || ||||| ||    
T  33602632 actaacggaccttttggacggagggactaatttgacggacgtctgtaaaattcagggactaatttgatatttcacaaaattcagggacgaaattgaccga 33602731  T
Q  109 nnnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
           |||||||||| |||||||||||||||||    
T  33602732 -tttttcaaaattcaaggacgaatttgaggtatta 33602765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25278975 - 25279077
Alignment:
Q  43 atggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtatt 142  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| |   || |||||| ||||       |||||||||| ||||||||||||||||    
T  25278975 atggacgtctgtaaaattcagggactaaatagatatttcgcaaaatttaggaacgaatttggctga-tttttgaaaattcaaggacgaatttgaggtatt 25279073  T
Q  143 agtc 146  Q
    ||||    
T  25279074 agtc 25279077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 31236908 - 31236819
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||| |||||||||||||| |||||||||||  |||||||||||| ||       |||||||||| ||||||||||||||||||||    
T  31236908 aaattcaggaactaaatagatatttcgcaaaattcagggacaaatttgaccga-ttttttaaaattcaaggacgaatttgaggtattagtc 31236819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 52643600 - 52643736
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||| ||| || |     ||||||| |||||||||||||||||||| ||||| |||||||||||  ||| |||    
T  52643600 tcatcaccactaacggagcttttggacggagagaccatct-----gacgtttataaaattcagggactaaataaatatttcgcaaaattcagggacgaat 52643694  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    || |||||       |||||| ||| |||||||||||||||||    
T  52643695 ttaactga-tttttaaaaatttaaggacgaatttgaggtatta 52643736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 47013081 - 47013152
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  ||||||||||||||| |||||||||||||||| | |||||| || ||||||||    
T  47013081 ttttggacggagggactgatttgatggacgtttgcaaaattcagggactaatttgatatttcgaaaaattca 47013152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 51122042 - 51121961
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||||||| |||||||| |||||||| ||||||||||||||  |  |||||||||||| |||| ||||||  ||||||||    
T  51122042 cactaacagaccttttggacggagggaccattttgatggacgtgagagaaattcagggacgaaattgatattttgcaaaatt 51121961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 25278934 - 25278854
Alignment:
Q  65 gactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||||||||| |||||||||||  |||||||||||||||       |||||||||| | ||||||||||||||||||    
T  25278934 gactaaatagatatttcgcaaaattcagggacaaatttgactga-tttttgaaaattcaaggatgaatttgaggtattagtc 25278854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 26223706 - 26223587
Alignment:
Q  26 atggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaag 125  Q
    |||||||||||| |||||| ||| |||   ||||||||||||||| | |||||| |||||||||||  ||| || ||||| ||       ||||||||||    
T  26223706 atggagggactaatttgattgacattttgtaaattcagggactaatttgatatttcgcaaaattcagggacgaaattgaccga-tttttcaaaattcaag 26223608  T
Q  126 aacgaatttgaggtattagtc 146  Q
     ||||||||||||||||||||    
T  26223607 gacgaatttgaggtattagtc 26223587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 9121667 - 9121736
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||| |||||||||  |||||||||||| || |||||||||||||||| | |||||| || ||||||    
T  9121667 ttttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaatt 9121736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 105
Target Start/End: Complemental strand, 51894656 - 51894607
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgac 105  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||||||    
T  51894656 aaattcagggactaaatatatatttcgcaaaattcagagacaaatttgac 51894607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 37346021 - 37346055
Alignment:
Q  116 aaaattcaagaacgaatttgaggtattagtcctaa 150  Q
    |||||||||| ||||||||||||||||||||||||    
T  37346021 aaaattcaaggacgaatttgaggtattagtcctaa 37346055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 43868751 - 43868697
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattca 62  Q
    ||||||| |||| |||||| ||| |||||||||||||||| |||||| |||||||    
T  43868751 cactaacggagcatttggacggaaggactattttgatggatgtttgttaaattca 43868697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 3011944 - 3011858
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    |||||||| ||||||||||||||| |||||||||||   || |||||||||||       |||||| ||| |||||||||||||||||    
T  3011944 aaattcagagactaaatagatatttcgcaaaattcaggaacgaatttgactga-ttttttaaaatttaaggacgaatttgaggtatta 3011858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 1442646 - 1442594
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaat 72  Q
    ||||||| |||||||||  |||||||||||| || ||||||||||||| ||||    
T  1442646 ttttggacggagggactgatttgatggacgtctgcaaaattcagggacgaaat 1442594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 146
Target Start/End: Complemental strand, 8539818 - 8539675
Alignment:
Q  2 catcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatt 101  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || ||||    
T  8539818 catcaacactaacggagcttttggatggagcgactattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattcaagaacgaatt 8539719  T
Q  102 tgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| |||       |||||||||| ||||||||||||||||||||    
T  8539718 tgattga-tttttcaaaattcaaggacgaatttgaggtattagtc 8539675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7267987 - 7267839
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||    
T  7267987 tcatcaccactaacggagcttttggacggagggatcattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagtgacgaat 7267888  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcctaa 150  Q
    |||   ||       |||||||||| ||||||||||||||||||||||||    
T  7267887 ttggacga-ttttttaaaattcaaggacgaatttgaggtattagtcctaa 7267839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 17574462 - 17574318
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  17574462 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 17574363  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  17574362 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 17574318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34327779 - 34327635
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  34327779 tcatcaccactaacagagcttttggacggagagaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagcgacgaat 34327680  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| |  |       |||||||||| ||||||||||||||||||||    
T  34327679 ttggc-caattttagaaaattcaaggacgaatttgaggtattagtc 34327635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 36057593 - 36057738
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||| |||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||| |||||||||||  ||| |||    
T  36057593 tcatcaccattaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggtctaaatagatatttcgcaaaattcagggacgaat 36057692  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcc 147  Q
    ||| | ||       |||||||||| |||||||||||||||||||||    
T  36057693 ttggccga-tttttgaaaattcaaggacgaatttgaggtattagtcc 36057738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30468260 - 30468348
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  30468260 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatatttcgcaaaatt 30468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2179931 - 2179787
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||  ||||||||||| |||||||| ||||||||||| || ||||||||||||||| |||||||||||| | |||||||||  ||| |||    
T  2179931 tcatcaccactaatggagcttttggacggagggaccattttgatggatgtctgtaaaattcagggattaaatagatatttcacaaaattcagggacgaat 2179832  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| || |||||||||||||||||    
T  2179831 ttgaccga-ttttttaaaattcaaggacaaatttgaggtattagtc 2179787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 18624988 - 18625129
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| |||||| ||||||||||| ||| |||| |||||||||||||  |||||||||||||||||||||||||||| | |||||||||  ||| |||    
T  18624988 tcatcactactaacggagcttttggacggaaggaccattttgatggacgagtgtaaaattcagggactaaatagatatttcacaaaattcagggacgaat 18625087  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    ||  ||||       |||||||||| |||||||||||||||||    
T  18625088 ttagctga-tcagtgaaaattcaaggacgaatttgaggtatta 18625129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 30463989 - 30463900
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||||||||||| |||||||||||  ||| |||||||| ||       |||||||||| ||||||||||||||||||||    
T  30463989 aaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccga-ttttttaaaattcaaggacgaatttgaggtattagtc 30463900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 40780675 - 40780604
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  ||||||||||||||| |||||||||||||||| | |||||| || ||||||||    
T  40780675 ttttggacggagggactgatttgatggacgtttgcaaaattcagggactaatttgatatttcgaaaaattca 40780604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 24541230 - 24541282
Alignment:
Q  39 tttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  24541230 tttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattca 24541282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 28813765 - 28813812
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttg 103  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||    
T  28813765 aaattcagggactaaatagatatttcgcaaaattcaaggacgaatttg 28813812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 29621780 - 29621851
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  |||||||||||| || |||||||||||||||| | |||||| || ||||||||    
T  29621780 ttttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattca 29621851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 2854325 - 2854450
Alignment:
Q  19 cttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaa 118  Q
    |||||||| |||||||| | |||| ||||||| ||||||||||||||||||| | ||| || || ||||||||  ||| || ||||| ||       |||    
T  2854325 cttttggacggagggacgaatttgttggacgtctgtaaaattcagggactaatttgat-tttcgaaaaattcagggacgaaattgaccga-tttttcaaa 2854422  T
Q  119 attcaagaacgaatttgaggtattagtc 146  Q
    ||||||| ||||||||||||||||||||    
T  2854423 attcaaggacgaatttgaggtattagtc 2854450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 43492131 - 43492168
Alignment:
Q  54 taaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43492131 taaaattcagggactaaatagatatttcgcaaaattca 43492168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 12738736 - 12738825
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||||||||||| |||||||||||   || |||||| | ||       |||||||||| ||||||||||||||||||||    
T  12738736 aaattcagggactaaatagatatttcgcaaaattcaggtacgaatttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 12738825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 12801559 - 12801648
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||||||||||| |||||||||||   || |||||| | ||       |||||||||| ||||||||||||||||||||    
T  12801559 aaattcagggactaaatagatatttcgcaaaattcaggtacgaatttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 12801648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 18728591 - 18728670
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||  ||||| ||||||||  ||||||||||||| ||  ||||||||||||||| | |||||| |||| ||||    
T  18728591 ctaacagagcacttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataatt 18728670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 32087649 - 32087570
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||  ||||| ||||||||  ||||||||||||| || |||||| ||||||||| | |||||| |||| ||||    
T  32087649 ctaacagagcacttggacggagggacctttttgatggacgtctgaaaaattaagggactaagttgatatttcgcataatt 32087570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 42473606 - 42473655
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggacta 69  Q
    ||||||| ||| |||||  |||||||||||| ||||||||||||||||||    
T  42473606 ttttggacggaaggactgatttgatggacgtctgtaaaattcagggacta 42473655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 15459182 - 15459242
Alignment:
Q  14 cagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatag 74  Q
    |||||| |||||| | |||||| |||||||||||||| ||| ||||||||| || ||||||    
T  15459182 cagagcatttggacgaagggaccattttgatggacgtctgttaaattcaggaacaaaatag 15459242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 23293170 - 23293314
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | | |||    
T  23293170 tcatcaccactaacggagcttttggacggagggactattttgatggacgtttgtaaaattcatggactaaatagatatttcgcaaaattcaagggcgaat 23293269  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| ||||        |||||||||||| |||||||||||||||||    
T  23293270 ttggctgatttttcg-aaattcaagaacaaatttgaggtattagtc 23293314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 146
Target Start/End: Complemental strand, 21348865 - 21348723
Alignment:
Q  3 atcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaattt 102  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  21348865 atcaccactaacagagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaattt 21348766  T
Q  103 gactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    | | ||       |||||||||| || |||||||||||||||||    
T  21348765 ggccga-ttttttaaaattcaaggacaaatttgaggtattagtc 21348723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 27899081 - 27899225
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  27899081 tcatcaccactaacggagcttttggacggagggaccatttttatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaat 27899180  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  27899181 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 27899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 53190759 - 53190903
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  53190759 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 53190858  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  53190859 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 53190903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 30599918 - 30600063
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||||||||||||||||||||||||| |||||||||||  |||||||    
T  30599918 tcatcaccactaacagagcttttggacggagggaccattttgatcgacgtctctaaaattcagggactaaatagatatttcgcaaaattcagggacaaat 30600017  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcc 147  Q
    ||| | ||       |||||| ||| |||||||||||||||||||||    
T  30600018 ttggccga-tttgtaaaaatttaaggacgaatttgaggtattagtcc 30600063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 2226152 - 2226296
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||| ||||||| |||||||  ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  2226152 tcatcaccactaacagagtttttggacggagggaacattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 2226251  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  2226252 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 2226296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 46112631 - 46112487
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||||||||| |||||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||| || |||    
T  46112631 tcatcaccactaacatagcttttgaacggagggaccattttgatggacgtctgtaaaattcatggactaaatagatattttgcaaaattcaataacgaat 46112532  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  46112531 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 46112487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42279651 - 42279562
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattc 90  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||  |||||||||    
T  42279651 tcatcaccactaacagagcttttggacggagggaccattttgatagacgtctgtaaaattcagggactaaatagatattttgcaaaattc 42279562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43765281 - 43765192
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattc 90  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||  |||||||||||||| ||||||||||    
T  43765281 tcatcaccactaacggagcttttggatggagggaccattttgatggacgtctgtaaaattcagaaactaaatagatatttcgcaaaattc 43765192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35905712 - 35905816
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||| | ||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  35905712 tcatcaccactaccggagcttttggacggagggaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 35905811  T
Q  101 ttgac 105  Q
    |||||    
T  35905812 ttgac 35905816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 54898574 - 54898437
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactg 107  Q
    ||||||| ||||||||||| |||| ||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||  ||| |||||||| |    
T  54898574 cactaacggagcttttggacggagagaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccg 54898475  T
Q  108 annnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |       |||||||||| ||||||||||||||||||||    
T  54898474 a-ttttttaaaattcaaggacgaatttgaggtattagtc 54898437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 51684754 - 51684610
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||  ||  |||    
T  51684754 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatattttgcaaaattcagggatgaat 51684655  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| ||||       |||||||||| ||||||||||| ||||||||    
T  51684654 ttggctga-tttttgaaaattcaaggacgaatttgagatattagtc 51684610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 17515454 - 17515364
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| | | |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17515454 tcatcaccactaacggtgattttggacagagggaccattttgatggacgtttgtaaaattcagggactaaatagatatttcgcaaaattca 17515364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 48830806 - 48830912
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||  ||||||||||||||| ||  |||||| ||||  |||    
T  48830806 tcatcaccactaacagagcttttggacggagggaccattttgatggacgtccgtaaaattcaaagactaaatagatatttcgttaaattc-atgaacaat 48830904  T
Q  101 ttgactga 108  Q
    ||||||||    
T  48830905 ttgactga 48830912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19987594 - 19987684
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| ||||||||| |||||||| |||||||||  |||||||||||| ||||||||| ||||||||| | |||||| |||||||||||    
T  19987594 tcatcactactaacagaccttttggacggagggactgatttgatggacgtgtgtaaaatttagggactaatttgatatttcgcaaaattca 19987684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44276196 - 44276266
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaa 71  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||||||    
T  44276196 tcatcaccactaacagagcttttggacggagggaccattttgatgggcgtctgtaaaattcaaggactaaa 44276266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 46197864 - 46197760
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||| ||||||| || |||||||| | |||||| ||||| |||||||| ||||||||||||| ||||||||||||||  ||||||||||  ||| |||    
T  46197864 tcatcatcactaacggaacttttggacgaagggaccattttaatggacgtctgtaaaattcaggaactaaatagatattttgcaaaattcagagacgaat 46197765  T
Q  101 ttgac 105  Q
    |||||    
T  46197764 ttgac 46197760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 41977894 - 41977750
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||| ||||  |||||||||| |||||||| ||||||| |||||| ||||||||||||||||||| | |||||| ||| |||||||  |||  ||    
T  41977894 tcatcaccattaacgaagcttttggacggagggaccattttgacggacgtctgtaaaattcagggactaatttgatatttcgccaaattcagggacgtat 41977795  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  41977794 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 41977750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2377173 - 2377083
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| |||||||| || ||||| || |||||||||||||| |||||||||||| ||||||||| || ||  ||||||||||    
T  2377173 tcatcaccactaacggagcttttagacggaggaaccattttgatggacgtctgtaaaattcagagactaaatatattttttgcaaaattca 2377083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7884873 - 7884939
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  7884873 tcatcaccactaacggaacttttggacggagggaccattttgatggacgtctgtaaaattcagggac 7884939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 2660346 - 2660266
Alignment:
Q  11 taacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||| |||||||| | |||||||||||| ||||||||||| ||||||| | |||||| |||||||||||    
T  2660346 taacagaccttttggacggagggacgaatttgatggacgtctgtaaaattcaaggactaatttgatatttcgcaaaattca 2660266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 3152218 - 3152308
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| | |||| || |||||||| ||||||||   |||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  3152218 tcatcactattaacggaccttttggacggagggacggatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattca 3152308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 54092821 - 54092764
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  54092821 ctaacagagcatttggacggaaggactattttgatggacgtttgttaaattcagggac 54092764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 44794351 - 44794261
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| | |||| || |||||||| |||||||| | |||||||||| | || |||||||||||||||| | |||||| |||||||||||    
T  44794351 tcatcactattaacggaccttttggacggagggacgaatttgatggacttctgcaaaattcagggactaatttgatatttcgcaaaattca 44794261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5133133 - 5133068
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaata 73  Q
    ||||||| |||| |||||| ||| ||||||||||||||||||||||| ||||||| |||| |||||    
T  5133133 cactaacggagcatttggacggaaggactattttgatggacgtttgttaaattcaaggacaaaata 5133068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 146
Target Start/End: Complemental strand, 30598454 - 30598337
Alignment:
Q  28 ggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaa 127  Q
    |||||||||| |||||| ||| |||   ||||||| |||| |||||| |||| |||||||||||  |||||||||||| ||       |||||||||| |    
T  30598454 ggagggactaatttgattgacattttgtaaattcaaggacaaaatagctatttcgcaaaattcagggacaaatttgaccga-tttttgaaaattcaagga 30598356  T
Q  128 cgaatttgaggtattagtc 146  Q
    |||||||||||||||||||    
T  30598355 cgaatttgaggtattagtc 30598337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 42282473 - 42282559
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    ||||||| |||||||||||||||| |||||||||||   || |||||||||||       |||||||||| |||||||||||||||||    
T  42282473 aaattcaaggactaaatagatatttcgcaaaattcagaaacgaatttgactga-tttttgaaaattcaaggacgaatttgaggtatta 42282559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 600853 - 600805
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacg 49  Q
    |||||||||||||| |||||||| || |||||||| |||||||||||||    
T  600853 tcatcaccactaacggagcttttagacggagggaccattttgatggacg 600805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 23774268 - 23774208
Alignment:
Q  29 gagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||||| ||||||||||||| ||  ||||||||||||||||| |||||| |||| ||||    
T  23774268 gagggacttttttgatggacgtctgacaaattcagggactaaattgatatttcgcataatt 23774208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 46114105 - 46114152
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttg 103  Q
    |||||||  ||||||||||||||| |||||||||||| ||||||||||    
T  46114105 aaattcaatgactaaatagatatttcgcaaaattcaaggacaaatttg 46114152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 54412517 - 54412596
Alignment:
Q  26 atggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgac 105  Q
    |||||||||||  |||||| ||| |||   ||||||||| |||||||||||||  |||||||||||| ||| ||||||||    
T  54412517 atggagggactgatttgattgacattttgtaaattcaggaactaaatagatatctcgcaaaattcaaggacgaatttgac 54412596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 5125938 - 5125884
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattca 62  Q
    ||||||| |||| ||||||  || ||||||||||||||||||||||| |||||||    
T  5125938 cactaacggagcatttggaccgaaggactattttgatggacgtttgttaaattca 5125884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 41623789 - 41623735
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattca 62  Q
    ||||||| |||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  41623789 cactaacggagcatttgaacggaaggactattttgatggacgtttgttaaattca 41623735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 23888772 - 23888821
Alignment:
Q  21 tttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||| ||||||||  ||||||||||||||||  |||||||||||||||    
T  23888772 tttggacggagggacctttttgatggacgtttgacaaattcagggactaa 23888821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 41979411 - 41979448
Alignment:
Q  116 aaaattcaagaacgaatttgaggtattagtcctaatta 153  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  41979411 aaaattcaaggacgaatttgaggtattagtccaaatta 41979448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 20523510 - 20523406
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||    
T  20523510 tcatcaccactaacagaacttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgaat 20523411  T
Q  101 ttgac 105  Q
    |||||    
T  20523410 ttgac 20523406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10568543 - 10568436
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| ||||| ||| |||||||| ||| |||    
T  10568543 tcatcaccactaacggagcttttggacggagggactattttgatagacgtctgtaaaattcagggactaaataaatatttcgctaaattcaaggacgaat 10568444  T
Q  101 ttgactga 108  Q
    ||||||||    
T  10568443 ttgactga 10568436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32439071 - 32439175
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  32439071 tcatcactactaacagatcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 32439170  T
Q  101 ttgac 105  Q
    |||||    
T  32439171 ttgac 32439175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 7372938 - 7373042
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||  ||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||| ||||| |||||||||||  ||| |||    
T  7372938 tcatcaccactaatggagcttttggacggagggaccattttgatggacgcctgtaaaattcagggactaaataaatatttcgcaaaattcagggacgaat 7373037  T
Q  101 ttgac 105  Q
    |||||    
T  7373038 ttgac 7373042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13613562 - 13613706
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||  || |||||||| |||||||||| |||||||||||| ||||||||||||||||||| | |||||| |||||||||||  ||| |||    
T  13613562 tcatcaccactaatggaccttttggacggagggactaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaat 13613661  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| |||||||| |||||||||||    
T  13613662 ttgaccga-tttttcaaaattcaaggacgaatttaaggtattagtc 13613706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 32517021 - 32516877
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| || |||||||| ||||  | ||||||||  ||| |||    
T  32517021 tcatcaccactaacggagcttttggacggagggacaattttgatggacgtatgtaaaattcaagggctaaataggtattttgtaaaattcagggacgaat 32516922  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  32516921 ttgaccga-ttttttaaaattcaaggacgaatttgaggtattagtc 32516877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9398804 - 9398714
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| || |||||||| |||||||| ||||||||| |||| | |||||||||||||||||||||||||| |||||||||||    
T  9398804 tcatcaccactaacggaacttttggacggagggaccattttgatgaacgtctataaaattcagggactaaatagatatttcgcaaaattca 9398714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 6899629 - 6899485
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||| ||||||| ||||||||||| | |||||| ||||||||||| || ||||||||| |||||||||||||||||| | ||||||| |  ||| |||    
T  6899629 tcatcaacactaacggagcttttggacgaagggaccattttgatggatgtctgtaaaatttagggactaaatagatatttcacaaaatttagagacgaat 6899530  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||       |||||||||| || |||||||||||||||||    
T  6899529 ttgactga-tttttgaaaattcaaggacaaatttgaggtattagtc 6899485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 11355366 - 11355223
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||| | ||||||||||| |||||||| |||||| ||| ||| ||||||||||||||| | |||||||||| |  |||||||| |||| |||    
T  11355366 tcatcaccactaccggagcttttggacggagggaccattttggtggccgtctgtaaaattcagggagttaatagatatttcataaaattcagtgacgaat 11355267  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagt 145  Q
    ||||| ||       |||||||||| |||||||||||||||||||    
T  11355266 ttgaccga-ttttttaaaattcaaggacgaatttgaggtattagt 11355223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7049901 - 7049835
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||    
T  7049901 tcatcaccacgaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggac 7049835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 9400035 - 9400124
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||| |||||||| |||||||| |||||||||||| ||  |||||||||||       |||||||||| ||||||||||||||||||||    
T  9400035 aaattcggggactaattagatatttcgcaaaattcaaggatgaatttgactga-tttttcaaaattcaaggacgaatttgaggtattagtc 9400124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14338455 - 14338543
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||| || |||| ||||||||| | |||||||| |||||||||||||| ||| |||||||||||  || |||| ||| |||||||||    
T  14338455 tcatcatcagtaacggagcttttgaacggagggaccattttgatggacgtctgtgaaattcagggatgaattagacatttcgcaaaatt 14338543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 3456873 - 3456802
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  |||||||||||| || |||||||||||||||| | |||||| || ||||||||    
T  3456873 ttttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattca 3456802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 11163940 - 11163875
Alignment:
Q  5 caccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||||| | || |||||| ||| |||||| |||||| ||||||||| |||||||||||||||    
T  11163940 caccactaacggtgcatttggacggaaggactaatttgattgacgtttgttaaattcagggactaa 11163875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 3018433 - 3018500
Alignment:
Q  22 ttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||||||  ||||||||||||| ||  ||||||||||||||| | |||||| |||| ||||    
T  3018433 ttggatggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataatt 3018500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 30891261 - 30891198
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaa 71  Q
    |||||| ||||| |||||| |||||||||| |||| ||||||| ||  ||||||||||||||||    
T  30891261 cactaatagagcatttggacggagggactactttgttggacgtctgacaaattcagggactaaa 30891198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 32455890 - 32455961
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  |||||||||||| || ||||||||| |||||| | |||||| || ||||||||    
T  32455890 ttttggacggagggactgatttgatggacgtctgcaaaattcagtgactaatttgatatttcgaaaaattca 32455961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 25172104 - 25172154
Alignment:
Q  16 gagcttttggatggagggactattttgatggacgtttgtaaaattcaggga 66  Q
    |||| |||||| ||| |||||||||| |||||||||||| |||||||||||    
T  25172104 gagcatttggacggaaggactatttttatggacgtttgttaaattcaggga 25172154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 16763220 - 16763076
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||| |||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  16763220 tcatcgccactaacagagattttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 16763121  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  16763120 ttgaccga-tttttaaaaattcaaggacgaatttgaggtattagtc 16763076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 40560367 - 40560260
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||  ||| |||    
T  40560367 tcatcaccactaacagaacttttggacggagggactattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 40560268  T
Q  101 ttgactga 108  Q
    ||| ||||    
T  40560267 ttggctga 40560260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 19908246 - 19908391
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||  ||| |||    
T  19908246 tcatcaccactaacggagcttttggacggagggaccattttgacggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggactaat 19908345  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  19908346 ttggccgatttttttaaaattcaaggacgaatttgaggtattagtc 19908391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 42519205 - 42519346
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgc-aaaattcaatgacaaa 99  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  || ||||||||| ||| ||    
T  42519205 tcatcaccactaacggagcttttggatggagggaccattttgatggacgtctgtaaaattcagggactaaatagatattttgcaaaaattcaaggactaa 42519304  T
Q  100 tttgactgannnnnnnaaaattcaagaacgaatttgaggtatt 142  Q
    ||||| | |       |||||||||| ||||||||||||||||    
T  42519305 tttga-tcaattttttaaaattcaaggacgaatttgaggtatt 42519346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16377197 - 16377301
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||  |||||||    
T  16377197 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtatgtaaaattcaaggactaaatagatattttgcaaaattcagggacaaat 16377296  T
Q  101 ttgac 105  Q
    |||||    
T  16377297 ttgac 16377301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2767078 - 2766934
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| |||||||||||  ||||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||| | |    
T  2767078 tcatcaccactaacggagcttttggacagagggaccattttgatagacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaaggacgagt 2766979  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||| ||||||||    
T  2766978 ttgaccga-tttttaaaaattcaaggacgaatttgagctattagtc 2766934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39664748 - 39664892
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| || |||||||   ||| |||    
T  39664748 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgtaaaattcggggacgaat 39664847  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  39664848 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 39664892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 44709745 - 44709835
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||||||||||  |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||    
T  44709745 tcatcaccactaacgaagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagttatttcgcaaaattca 44709835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 17696350 - 17696272
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    |||||||||||||| ||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||    
T  17696350 tcatcaccactaacggagcttttggacggagtgaccattttgattgacgtttgtaaaattcagggactaaatagatatt 17696272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 14389084 - 14389228
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| ||||||  | |||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||  ||| |||    
T  14389084 tcatcactactaacgaaacttttggacggagggaccattttgatggacatttggaaaattcagggactaaatagatatttcgcaaaattcagggacgaat 14389183  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||  ||||||||||||||||||||    
T  14389184 ttggccga-tttttgaaaattcaatgacgaatttgaggtattagtc 14389228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6797651 - 6797561
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||||  |||||||||||||||| ||||| || |||||||| ||||| ||||||||| |||||||||||||||||| |||||||||||    
T  6797651 tcatcacccgtaacagagcttttggacggaggaaccattttgatagacgtctgtaaaattaagggactaaatagatatttcgcaaaattca 6797561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 39455313 - 39455223
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||| |||||||| ||||||||| | |||| ||| |||||||||||||| ||||||||||| ||||||||||||||||  ||||||||||    
T  39455313 tcatcgccactaacggagcttttgaacggagagaccattttgatggacgtctgtaaaattcatggactaaatagatattttgcaaaattca 39455223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 7744180 - 7744099
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||| || ||||||||||||||||| |||||||||||| |  |  |||||||||||| |||| |||||| |||||||||    
T  7744180 cactaacggaccttttggatggagggaccattttgatggacatgagagaaattcagggacgaaattgatatttcgcaaaatt 7744099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 19581520 - 19581414
Alignment:
Q  39 tttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgagg 138  Q
    |||||||||| ||||  ||||||  |||||||||||||||| |||||||||||  |||||||||| ||||       |||||| ||| ||||||||||||    
T  19581520 tttgatggacatttggtaaattcgaggactaaatagatatttcgcaaaattcagggacaaatttggctga-tttttaaaaatttaaggacgaatttgagg 19581422  T
Q  139 tattagtc 146  Q
    ||||||||    
T  19581421 tattagtc 19581414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 37020633 - 37020548
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgac 105  Q
    ||||||| |||||||||  |||||||||||| || |||||||||||||||| | |||||| |  ||||||||| |||||| |||||    
T  37020633 ttttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcaaaaaattcaaggacaaaattgac 37020548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 6785991 - 6786059
Alignment:
Q  11 taacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    |||||||  ||||||| |||||||||  |||||||||||| ||||||||||||||||||| | ||||||    
T  6785991 taacagacattttggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatt 6786059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 62815 - 62866
Alignment:
Q  16 gagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||| |||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  62815 gagcatttggacggaaggactattttgatggacgtttgttaaattcagggac 62866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 24208061 - 24208120
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    ||||||| |||||||||  |||||||||||| ||||||||||||||||||| | ||||||    
T  24208061 ttttggacggagggactgatttgatggacgtctgtaaaattcagggactaatttgatatt 24208120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37645631 - 37645524
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||| || ||||||||||| |||| |||||||| ||||||||  || | || |||||||| |||||||||||||||| |  |||||| || ||| |||    
T  37645631 tcatcatcaataacagagcttatggacggagggacaattttgataaacatctgcaaaattcaaggactaaatagatatttcctaaaatttaaggacgaat 37645532  T
Q  101 ttgactga 108  Q
    | ||||||    
T  37645531 tcgactga 37645524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 15807903 - 15807968
Alignment:
Q  5 caccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||||| | || |||||| ||| |||||| |||||| ||||||||| |||||||||||||||    
T  15807903 caccactaacggtgcatttggacggaaggactaatttgattgacgtttgttaaattcagggactaa 15807968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 32608051 - 32608116
Alignment:
Q  5 caccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||||| | || |||||| ||| |||||| |||||| ||||||||| |||||||||||||||    
T  32608051 caccactaacggtgcatttggacggaaggactaatttgattgacgtttgttaaattcagggactaa 32608116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 4416947 - 4417003
Alignment:
Q  11 taacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||||| ||| || ||| |||||||||| |||||||||||| ||||||||||||    
T  4416947 taacagagcatttagacggaaggactatttttatggacgtttgttaaattcagggac 4417003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 29909649 - 29909728
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||  ||||| ||||||||  ||||||||||||| ||  ||||| ||||||||||| |||||| |||| ||||    
T  29909649 ctaacagagcacttggacggagggacctttttgatggacgtctgacaaattaagggactaaattgatatttcgcataatt 29909728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 13999936 - 13999890
Alignment:
Q  16 gagcttttggatggagggactattttgatggacgtttgtaaaattca 62  Q
    |||| |||||| ||| ||||||||||||||||||||||| |||||||    
T  13999936 gagcatttggacggaaggactattttgatggacgtttgttaaattca 13999890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 17946231 - 17946150
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||| || |||||||| |||||||| |||||||||||| |  |  |||||||||||| |||| ||||||  ||||||||    
T  17946231 cactaacggaccttttggacggagggaccattttgatggacatgagagaaattcagggacaaaattgatattttgcaaaatt 17946150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 37646477 - 37646530
Alignment:
Q  55 aaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactga 108  Q
    ||||||||||||||||||||||||| |||| ||||  | ||| |||||||||||    
T  37646477 aaaattcagggactaaatagatatttcgcagaatttgaggacgaatttgactga 37646530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 15806227 - 15806187
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||| |||||| ||||||||| |||||||||||||||    
T  15806227 agggactaatttgattgacgtttgttaaattcagggactaa 15806187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 45359480 - 45359376
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||| |||  ||    
T  45359480 tcatcaccactaacggagcttttggatggagggaccattttgatggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcaaggacggat 45359381  T
Q  101 ttgac 105  Q
    |||||    
T  45359380 ttgac 45359376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 37115506 - 37115650
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||  ||||||||||   || |||    
T  37115506 tcatcaccactaacggagcttttggacggagggactattttgatggacgtctgtaaaattcaggtactaaatagatattttgcaaaattcaggaacgaat 37115605  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||       |||||||||  ||||||||||||||||||||    
T  37115606 ttgactga-ttttttaaaattcaatgacgaatttgaggtattagtc 37115650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 6602479 - 6602389
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  6602479 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattca 6602389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 39859209 - 39859353
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||||||| ||||||| |||||| ||||||||||| |||||||||||||||| |||||||||||  ||| |||    
T  39859209 tcatcaccactaacggagcttttggacggagggaccattttgacggacgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggactaat 39859308  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  39859309 ttggccga-ttttttaaaattcaaggacgaatttgaggtattagtc 39859353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 35693350 - 35693455
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa--atagatattacgcaaaattcaatgacaa 98  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||  | ||||||| |||||||||||| ||| |    
T  35693350 tcatcaccactaacagaacttttggatggagggaccattttgatggacgtctgtaaaattcagggactaattagagatattccgcaaaattcaaggacga 35693449  T
Q  99 atttga 104  Q
    ||||||    
T  35693450 atttga 35693455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 47386189 - 47386333
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| |||  ||| |||||||||||||| ||||||||| || ||||||||| ||||| |||||||||||| ||| |||    
T  47386189 tcatcaccactaacggagcttttggacggaatgaccattttgatggacgtctgtaaaatttagagactaaataaatatttcgcaaaattcaaggacgaat 47386288  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||||||       |||||| ||| ||||||||||||||||||||    
T  47386289 ttgactga-ttttttaaaattaaaggacgaatttgaggtattagtc 47386333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34776895 - 34776985
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||| ||||||| ||| ||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  34776895 tcatcatcactaacggagtttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattca 34776985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 30940405 - 30940493
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||||||||||| ||||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||||| || ||||||    
T  30940405 tcatcaccactaacggagcttttggacggagagaccattttgatgaacgtttgtaaaattcagggactaaatagatatttcgtaaaatt 30940493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13168267 - 13168162
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattc---agggactaaatagatattacgcaaaattcaatgaca 97  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||||||||| ||||||||||   |||||||||||||||||| |||||||||||| |||     
T  13168267 tcatcaccactaacggagcttttggacggatggaccattttgatggacgtctgtaaaattcaggagggactaaatagatatttcgcaaaattcaaggacg 13168168  T
Q  98 aatttg 103  Q
    ||||||    
T  13168167 aatttg 13168162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 24228389 - 24228479
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||  ||||||||||| | |||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  24228389 tcatcaccactaatggagcttttggacgaagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaattca 24228479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 38474123 - 38474227
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||| |||| |||||||| | ||| ||||||||||| |||||||||||||||| |||||||||||  ||| |||    
T  38474123 tcatcaccactaacggagcttttggacggatggaccattttgataggcgtctgtaaaattcaaggactaaatagatatttcgcaaaattcagggacgaat 38474222  T
Q  101 ttgac 105  Q
    |||||    
T  38474223 ttgac 38474227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 29996494 - 29996638
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| | |||| || ||||||||||||||||| | |||||||||||| ||||||||||||||| ||| | |||||| |||||||||||  ||||||     
T  29996494 tcatcactattaacggaccttttggatggagggacgaatttgatggacgtctgtaaaattcagggattaatttgatatttcgcaaaattcagggacaaaa 29996593  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||||| ||       |||||||||| ||||||||||||||||||||    
T  29996594 ttgaccga-tttttcaaaattcaaggacgaatttgaggtattagtc 29996638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 37796170 - 37796249
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||| |||||| |||| |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  37796170 ctaacggagcttatggacggagggactattttgatggacgtccgtaaaattcagggactaaatagatatttcgcaaaatt 37796249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 48852327 - 48852415
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||||||||||||||||||  ||| ||| |||||||||||||| ||||||||||| ||| ||||||||||||  ||||||||    
T  48852327 tcatcaccactaacagagcttttggaccgagagaccattttgatggacgtctgtaaaattcaaggattaaatagatattttgcaaaatt 48852415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 27666063 - 27666189
Alignment:
Q  19 cttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaa 118  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||||| | |||||| |||||||||||  ||| || ||| | ||       |||    
T  27666063 cttttggacggagggacggatttgatggacgtttgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccga-tttttcaaa 27666161  T
Q  119 attcaagaacgaatttgaggtattagtc 146  Q
    ||||||| ||||||||||||||||||||    
T  27666162 attcaaggacgaatttgaggtattagtc 27666189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 56474 - 56384
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  ||||||| ||||||| |   ||||||||||| ||||||||||||||||||| | |||||| |||||||||||    
T  56474 tcatcactactaacagacattttggacggagggagtgaattgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattca 56384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 146
Target Start/End: Original strand, 13169683 - 13169772
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||| | ||       |||||||||| ||||||||||||||||||||    
T  13169683 aaattcagggactaaatagatatttcgcaaaattcagggacaaatttggccga-tttttgaaaattcaaggacgaatttgaggtattagtc 13169772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 6056903 - 6056844
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||| |||| |||||| ||| ||||||||||||||||||||||| ||||||| ||||    
T  6056903 cactaacggagcatttggacggaaggactattttgatggacgtttgttaaattcaaggac 6056844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 20478167 - 20478096
Alignment:
Q  20 ttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    ||||||| |||||||||  |||||||||||| || |||||||||||||||| | |||||| || ||||||||    
T  20478167 ttttggacggagggactgatttgatggacgtctgcaaaattcagggactaatttgatatttcgaaaaattca 20478096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 33038786 - 33038865
Alignment:
Q  10 ctaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||  ||||| ||||||||  ||||||||||||| || |||||||||||||||| | |||||| |||| ||||    
T  33038786 ctaacagagcacttggacggagggacctttttgatggacgtctgaaaaattcagggactaagttgatatttcgcataatt 33038865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 48227911 - 48227990
Alignment:
Q  26 atggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgac 105  Q
    |||||||||||  |||||| ||| |||   |||||||||||| ||||||||||| |||||||||||| ||| ||||||||    
T  48227911 atggagggactgatttgattgacattttgtaaattcagggacaaaatagatatttcgcaaaattcaaagacgaatttgac 48227990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23906241 - 23906307
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||| ||| |||| ||||||||||| |||||||| |||||||||||||  ||||||||| ||||||    
T  23906241 tcatcgccattaacggagcttttggacggagggaccattttgatggacgactgtaaaatttagggac 23906307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 31915047 - 31915084
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31915047 agggactattttgatggacgtttgttaaattcagggac 31915084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 39857734 - 39857648
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    |||||| ||||||||||||||||| |||||||||||  ||| |||||||| ||       |||||||||| |||||||||||||||||    
T  39857734 aaattctgggactaaatagatatttcgcaaaattcagggacgaatttgaccga-ttttttaaaattcaaggacgaatttgaggtatta 39857648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 23962441 - 23962377
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaat 72  Q
    ||||||| |||| ||| || ||| ||||||||||||| ||||||||| |||||||||||| ||||    
T  23962441 cactaacggagcattttgacggaaggactattttgattgacgtttgttaaattcagggacaaaat 23962377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 31913606 - 31913547
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||| |||| |||||| ||| | |||||||||||||||||||||  |||||||||||    
T  31913606 cactaacggagcatttggacggaagaactattttgatggacgtttgttgaattcagggac 31913547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 1546424 - 1546343
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||| || |||||||| |||||||| ||||||||||||||  |  ||||||| ||||  ||| |||||| |||||||||    
T  1546424 cactaacggaccttttggacggagggaccattttgatggacgtgagagaaattcaaggacgcaattgatatttcgcaaaatt 1546343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 6605397 - 6605446
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaatgacaaatttgac 105  Q
    ||||||||||||||||||| |||| |||||||||||   |||||||||||    
T  6605397 aaattcagggactaaatagctatttcgcaaaattcaggaacaaatttgac 6605446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 13018158 - 13018102
Alignment:
Q  22 ttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatat 78  Q
    ||||| |||||||| |||||||||||||| ||| |||||||| ||  ||||||||||    
T  13018158 ttggacggagggaccattttgatggacgtatgttaaattcagagatgaaatagatat 13018102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 41781683 - 41781530
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||| ||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||||||||||| |||||  ||||||||||  |||||||    
T  41781683 tcatcatcactaacggagcttttggacggagggaccattttgatggatgtctgtaaaattcagggactaaataaatattttgcaaaattcagggacaaat 41781584  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcctaattata 155  Q
    ||||| ||       ||||||||||||| ||||||||||||||||| | ||||||    
T  41781583 ttgaccga-ttttttaaaattcaagaacaaatttgaggtattagtcattattata 41781530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 51012070 - 51011979
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaa 92  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||    
T  51012070 tcatcactactaacagagcttttggacggagggaccattttgatggacgtctgtaaaattcagagactaaatagatatttcgcaaaattcaa 51011979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 42980779 - 42980677
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||| ||| || ||||||||  |||||||    
T  42980779 tcatcaccactaacagagcttttggacggagggaccattttgatggacgtctgtaaaattaagggactaaatagaaatttcgtaaaattcatggacaaat 42980680  T
Q  101 ttg 103  Q
    |||    
T  42980679 ttg 42980677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41761726 - 41761814
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||||||||||||  |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  41761726 tcatcaccactaacgaagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaatt 41761814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 48813931 - 48813786
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||| ||||||||||||||| | |||||| |||||||||||||| | ||||||||||| |||||||| |||||  ||||||||||  || ||||    
T  48813931 tcatcaccaccaacagagcttttggacgaagggaccattttgatggacgtctataaaattcaggaactaaatatatattttgcaaaattcagggataaat 48813832  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcc 147  Q
    ||| ||||       |||||||||| |||||||||||||||||||||    
T  48813831 ttggctga-tttttgaaaattcaaggacgaatttgaggtattagtcc 48813786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 49523268 - 49523178
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattca 91  Q
    |||||||||||||| ||  ||||||| |||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  49523268 tcatcaccactaacggattttttggacggagggaccattttgatgaacgtctgtaaaattcagggactaaatagatatttcgcaaaattca 49523178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 35404425 - 35404526
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    |||||||||||||| ||||||||||| ||| |||| |||||| ||||||| ||||||||||||||| |||||| ||||| ||||||||| || ||| |||    
T  35404425 tcatcaccactaacggagcttttggacggatggaccattttgttggacgtctgtaaaattcagggattaaataaatatttcgcaaaattgaaggacgaat 35404524  T
Q  101 tt 102  Q
    ||    
T  35404525 tt 35404526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 48646727 - 48646828
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||||||||  |||||||||| ||| |||| ||||||||| | || |||||||||||||||||||||||||||| ||| |||||||| ||| |||    
T  48646727 tcatcaccactaacgaagcttttggacggaaggaccattttgatgaaggtctgtaaaattcagggactaaatagatatttcgctaaattcaaggacgaat 48646826  T
Q  101 tt 102  Q
    ||    
T  48646827 tt 48646828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 43519550 - 43519423
Alignment:
Q  19 cttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaa 118  Q
    |||||||| ||||||||   |||||||||||||||||||||||||||||||| | |||||| |||||||||||  ||| || ||| | ||       |||    
T  43519550 cttttggacggagggacggatttgatggacgtttgtaaaattcagggactaatttgatatttcgcaaaattcagggacgaaattggccga-tttttcaaa 43519452  T
Q  119 attcaagaacgaatttgaggtattagtcc 147  Q
    ||||||| |||||||||||||||||||||    
T  43519451 attcaaggacgaatttgaggtattagtcc 43519423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 11601807 - 11601674
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaatttgactg 107  Q
    |||||||  ||||| ||||  |||||||||||||||||||||| ||||||||||||||||| |||| |||||  ||||||||    || |||||||||||    
T  11601807 cactaacgaagcttgtggacagagggactattttgatggacgtctgtaaaattcagggact-aatatatattttgcaaaatttggggataaatttgactg 11601709  T
Q  108 annnnnnnaaaattcaagaacgaatttgaggtatta 143  Q
    |       ||||||||||||||||||| ||||||||    
T  11601708 a-tttttgaaaattcaagaacgaattttaggtatta 11601674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 52868129 - 52868217
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    ||||| |||||||| ||||||||||| | || ||| |||||||| | ||| ||| |||||||| ||||||||||||||| |||||||||    
T  52868129 tcatcgccactaacggagcttttggacgaagtgaccattttgataggcgtctgttaaattcagagactaaatagatatttcgcaaaatt 52868217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 26296874 - 26296940
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||| |||||||||| | ||||||||||  |||||||||||||||||||||  ||||||||||||    
T  26296874 tcatcaacactaacagatcatttggatggaatgactattttgatggacgtttgacaaattcagggac 26296940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 48645336 - 48645255
Alignment:
Q  64 ggactaaatagatattacgcaaaattcaatgacaaatttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    |||||||||||||||| |||||||||||  ||| |||||||||||       |||||||||| ||||||||||||||||||||    
T  48645336 ggactaaatagatatttcgcaaaattcatggacgaatttgactga-tttttgaaaattcaaggacgaatttgaggtattagtc 48645255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 44972548 - 44972489
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||| |||| |||||| ||| ||||||||||||||||||||||| ||||| ||||||    
T  44972548 cactaacggagcatttggacggaaggactattttgatggacgtttgttaaatttagggac 44972489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 13450970 - 13451028
Alignment:
Q  11 taacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggacta 69  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||  ||||||| ||||||    
T  13450970 taacagagcatttggatggagggaccattttgatggacgtctgataaattcaaggacta 13451028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2693233 - 2693320
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaatt 89  Q
    |||||| ||||||  || ||| |||| ||| |||| |||||||||||| ||| |||||||||  ||||||||||||||| |||||||||    
T  2693233 tcatcatcactaatggaacttatggacggatggaccattttgatggacattt-taaaattcaaagactaaatagatatttcgcaaaatt 2693320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 50131291 - 50131240
Alignment:
Q  16 gagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||| |||||| |||  |||||||||||||||||||||| ||||||||||||    
T  50131291 gagcatttggacggaatgactattttgatggacgtttgtcaaattcagggac 50131240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 20493916 - 20493880
Alignment:
Q  56 aaattcagggactaaatagatattacgcaaaattcaa 92  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  20493916 aaattcaggaactaaatagatatttcgcaaaattcaa 20493880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1454 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1454
Description:

Target: scaffold1454; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 1407 - 1329
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatatt 79  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  1407 tcatcaccactaacggagcttttggacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatt 1329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 3438 - 3294
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| | |||| || |||||||| |||||||| | |||||||||||| ||||||||||||||||||| | |||||| |||||||||||  ||||||     
T  3438 tcatcactattaacggaccttttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaa 3339  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  3338 ttggccga-tttttcaaaattcaaggacgaatttgaggtattagtc 3294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 4610 - 4466
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||| | |||| || |||||||| |||||||| | |||||||||||| ||||||||||||||||||| | |||||| |||||||||||  ||||||     
T  4610 tcatcactattaacggaccttttggacggagggacgaatttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacaaaa 4511  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtc 146  Q
    ||| | ||       |||||||||| ||||||||||||||||||||    
T  4510 ttggccga-tttttcaaaattcaaggacgaatttgaggtattagtc 4466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 8404 - 8258
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaaatagatattacgcaaaattcaatgacaaat 100  Q
    ||||||||||||||  |||||||||| ||| | || |||||||||||||| |  |||||||||||||||||||||||||  |||||||||||  || |||    
T  8404 tcatcaccactaacgaagcttttggacggatgtaccattttgatggacgtat--aaaattcagggactaaatagatattttgcaaaattcaagaacgaat 8307  T
Q  101 ttgactgannnnnnnaaaattcaagaacgaatttgaggtattagtcctaa 150  Q
    ||| |  |       |||||||||| |||||||||||||||||| |||||    
T  8306 ttggc-caattttttaaaattcaaggacgaatttgaggtattagacctaa 8258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 4596 - 4537
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||||| | |||||| ||| |||||||||||||||||||||||  |||||||||||    
T  4596 cactaacagaacatttggacggaaggactattttgatggacgtttgttgaattcagggac 4537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 6035 - 6072
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggac 67  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  6035 agggactaatttgatggacgtttgttaaattcagggac 6072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 36834 - 36899
Alignment:
Q  5 caccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||||| | || |||||| ||| |||||| |||||| ||||||||| |||||||||||||||    
T  36834 caccactaacggtgcatttggacggaaggactaatttgattgacgtttgttaaattcagggactaa 36899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 34714 - 34674
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggactaa 70  Q
    |||||||| |||||| ||||||||| |||||||||||||||    
T  34714 agggactaatttgattgacgtttgttaaattcagggactaa 34674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 30458 - 30517
Alignment:
Q  8 cactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||| |||| |||||| ||| | ||||||||||| ||||||||| ||||||||||||    
T  30458 cactaacggagcatttggacggaagaactattttgattgacgtttgttaaattcagggac 30517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 28456 - 28419
Alignment:
Q  30 agggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  28456 agggactattttgattgacgtttgttaaattcagggac 28419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37348 - 37282
Alignment:
Q  1 tcatcaccactaacagagcttttggatggagggactattttgatggacgtttgtaaaattcagggac 67  Q
    ||||||||| |||| ||| ||||||||||||  || |||||||| ||||| ||||||||||| ||||    
T  37348 tcatcaccattaacggagtttttggatggagaaaccattttgatagacgtctgtaaaattcatggac 37282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1357 times since January 2019
Visitors: 1419