View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0112-INSERTION-1 (Length: 120)
Name: NF0112-INSERTION-1
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0112-INSERTION-1
[» ] chr4 (2 HSPs)
[» ] chr2 (1 HSPs)
[» ] scaffold0175 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 60; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 11335165 - 11335082
Alignment:
Q
37
ggtgctatttcaaatgggaaagtctaaaacttttccaccatggatcagtttgattttagtcatttgatcaaaggaagactacag
120
Q
|||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||
T
11335165
ggtgttatttcacatgagaaagtctaaaacttttccaccatggatcagtttggttttagtcatttcatcaaaggaagaccacag
11335082
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 33010850 - 33010880
Alignment:
Q
2
ataagattattgttataaaataaaatataaa
32
Q
|||||||||||||||||||||||||||||||
T
33010850
ataagattattgttataaaataaaatataaa
33010880
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 32079833 - 32079764
Alignment:
Q
43
atttcaaatgggaaagtctaaaacttttccaccatggatcagtttgattttagtcatttgatcaaaggaa
112
Q
|||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||||||||||
T
32079833
atttcacatgggaaagtctaaaactttcccaccatggatcagtttggttttaatcatttaatcaaaggaa
32079764
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 43743134 - 43743178
Alignment:
Q
76
atggatcagtttgattttagtcatttgatcaaaggaagactacag
120
Q
||||||||||||| |||||||||||||||||||||||||| ||||
T
43743134
atggatcagtttggttttagtcatttgatcaaaggaagaccacag
43743178
T
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Target Overview ] [
Alignment Overview ]
Target: scaffold0175 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 26276 - 26318
Alignment:
Q
50
atgggaaagtctaaaacttttccaccatggatcagtttgattt
92
Q
|||||||||| ||||||||||||||||||| ||||||||||||
T
26276
atgggaaagtgtaaaacttttccaccatgggtcagtttgattt
26318
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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