View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0112-INSERTION-1 (Length: 120)
Name: NF0112-INSERTION-1
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-1 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 60; Significance: 5e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 11335165 - 11335082
Alignment:
| Q |
37 |
ggtgctatttcaaatgggaaagtctaaaacttttccaccatggatcagtttgattttagtcatttgatcaaaggaagactacag |
120 |
Q |
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| T |
11335165 |
ggtgttatttcacatgagaaagtctaaaacttttccaccatggatcagtttggttttagtcatttcatcaaaggaagaccacag |
11335082 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 33010850 - 33010880
Alignment:
| Q |
2 |
ataagattattgttataaaataaaatataaa |
32 |
Q |
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| T |
33010850 |
ataagattattgttataaaataaaatataaa |
33010880 |
T |
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Target: chr6 (Bit Score: 50; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 32079833 - 32079764
Alignment:
| Q |
43 |
atttcaaatgggaaagtctaaaacttttccaccatggatcagtttgattttagtcatttgatcaaaggaa |
112 |
Q |
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| T |
32079833 |
atttcacatgggaaagtctaaaactttcccaccatggatcagtttggttttaatcatttaatcaaaggaa |
32079764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 43743134 - 43743178
Alignment:
| Q |
76 |
atggatcagtttgattttagtcatttgatcaaaggaagactacag |
120 |
Q |
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| T |
43743134 |
atggatcagtttggttttagtcatttgatcaaaggaagaccacag |
43743178 |
T |
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Target: scaffold0175 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 26276 - 26318
Alignment:
| Q |
50 |
atgggaaagtctaaaacttttccaccatggatcagtttgattt |
92 |
Q |
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| T |
26276 |
atgggaaagtgtaaaacttttccaccatgggtcagtttgattt |
26318 |
T |
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