View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0112-INSERTION-10 (Length: 406)
Name: NF0112-INSERTION-10
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0112-INSERTION-10
[» ] chr2 (1 HSPs)
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 41351890 - 41351491
Alignment:
Q
7
aagcagatgcaacataattccgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattt
106
Q
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41351890
aagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattt
41351791
T
Q
107
taaacttggccaaataatcatctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattcaaattcaattgcaaaacacaagaat
206
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41351790
taaacttggccaaataatcatctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattcaaattcaattgcaaaacacaagaat
41351691
T
Q
207
ttggtgtgtatgtgtgcacgaggacaggaggattcaaattacctcggagatattgtcatctacacaatccgattgtgatggagacggaagagggtaaaat
306
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
T
41351690
ttggtgtgtatgtgtgcacgaggacaggaggattcaaattacctcggagatattgtcatctacacaatctgattgggatggagacggaagagggtaaaat
41351591
T
Q
307
ttccccttcaatatgtctttctccctttctctgtttgcgtccatcaaagcttgttctaacaaggctttggcttccggattaagttcgttgatgaatttca
406
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41351590
ttccccttcaatatgtctttctccctttctctgtttgcgtccatcaaagcttgttctaacaaggctttggcttccggattaagttcgttgatgaatttca
41351491
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 36228910 - 36228854
Alignment:
Q
126
atctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattca
182
Q
|||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||
T
36228910
atctctcagcctttgatcgaaacaaatgataaatttagatagcatcacaaaaattca
36228854
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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