View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0112-INSERTION-10 (Length: 406)
Name: NF0112-INSERTION-10
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 7 - 406
Target Start/End: Complemental strand, 41351890 - 41351491
Alignment:
| Q |
7 |
aagcagatgcaacataattccgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattt |
106 |
Q |
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| T |
41351890 |
aagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattt |
41351791 |
T |
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| Q |
107 |
taaacttggccaaataatcatctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattcaaattcaattgcaaaacacaagaat |
206 |
Q |
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| T |
41351790 |
taaacttggccaaataatcatctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattcaaattcaattgcaaaacacaagaat |
41351691 |
T |
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| Q |
207 |
ttggtgtgtatgtgtgcacgaggacaggaggattcaaattacctcggagatattgtcatctacacaatccgattgtgatggagacggaagagggtaaaat |
306 |
Q |
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| T |
41351690 |
ttggtgtgtatgtgtgcacgaggacaggaggattcaaattacctcggagatattgtcatctacacaatctgattgggatggagacggaagagggtaaaat |
41351591 |
T |
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| Q |
307 |
ttccccttcaatatgtctttctccctttctctgtttgcgtccatcaaagcttgttctaacaaggctttggcttccggattaagttcgttgatgaatttca |
406 |
Q |
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| T |
41351590 |
ttccccttcaatatgtctttctccctttctctgtttgcgtccatcaaagcttgttctaacaaggctttggcttccggattaagttcgttgatgaatttca |
41351491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 36228910 - 36228854
Alignment:
| Q |
126 |
atctttcagcctttgattgaaacaaatgataaattcagatagcatcacaaaaattca |
182 |
Q |
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| T |
36228910 |
atctctcagcctttgatcgaaacaaatgataaatttagatagcatcacaaaaattca |
36228854 |
T |
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