View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0112-INSERTION-14 (Length: 262)
Name: NF0112-INSERTION-14
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-14 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 29954511 - 29954761
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
29954511 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaactgagttagcgcatggaattgagctt |
29954610 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29954611 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
29954710 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29954711 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
29954761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 51369938 - 51369692
Alignment:
| Q |
12 |
tcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctttcta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||| |||||||| ||||||||||| |||||| |
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|
| T |
51369938 |
tcaaaagaatcatcttctgttgtttacattggatttggaagcgagtcaaagttagatcaacaagatttaactgagttagctcatggaattgaactttctg |
51369839 |
T |
|
| Q |
112 |
ggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgtttggaa |
211 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||| ||| | |||||||||| ||||||| |||||||||||||||||| ||||||| |||||||| |
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|
| T |
51369838 |
ggttacctttcttttgggctttgaaagatcgtaaagacggtgtatctgaattacctcaaggattcgaggaaagaacaaaagaacgtggaattgtttggaa |
51369739 |
T |
|
| Q |
212 |
aacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
||| |||| ||| || | || |||||||||||| ||||||||||| |
|
|
| T |
51369738 |
aacctgggtaccccagatcaaaatcttagctcatccatcaattggtg |
51369692 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 11531824 - 11532074
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
11531824 |
ggattcaaaagaatcgtcttctgttgtttacattggatttgggagcgagacgaaaataagtcaacaagatctaattgagttagctcatggaattgagctt |
11531923 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| |
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|
| T |
11531924 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaagaatttgaggaaagaacaaaagaacgtggaattgttt |
11532023 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11532024 |
ggaaaacatgggcaccacaacttaagatcttagcacatggatcaatcggtg |
11532074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 20492646 - 20492896
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
20492646 |
ggattcaaaagaatcatcttcggttgtttacattggattcgggagcgagttaaagttaaatcaacaagatctaactgagttagctcatggaattgagcaa |
20492745 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
20492746 |
tctaggttacctttcttttgggctttgaaaaaccttaaagaaggtacacttgaattacccgaaggatttgaagaaagaacaaaagaatatggaatcgttt |
20492845 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
20492846 |
ggaaaacatgggcaccacagctaaagatcttagctcatggatcaattggtg |
20492896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 1361861 - 1362111
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || | ||| ||| ||||| || ||||||||||||||| |
|
|
| T |
1361861 |
ggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcagaatgatttaactgagttggctcatggaattgagctt |
1361960 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||| |||| |
|
|
| T |
1361961 |
tctgggttgtctttcttttgggctttgaagaatctgaaagagggtacacttgaattacctgaaggatttgaggaaagaacgaaagaacgcggaattgttt |
1362060 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
1362061 |
ggaagacatgggcacctcagcttaaaatcttagctcatggagcaattggtg |
1362111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 1354975 - 1355225
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||| ||| ||||| || |||||||||||||| |
|
|
| T |
1354975 |
ggattcaagagaatcatcttctgttgtttacattggatttgggagtgagttgaagttgagtcaggaagatttaactgagttggcttatggaattgagctt |
1355074 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
||| ||||| ||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||| || |||||| | ||||| |||| |
|
|
| T |
1355075 |
tctgggttgtctttcttttggactttgaagaatctgaaagagggtacacttgaattacctgaaggattcgaggaaaggacgaaagaacgcggaattgttt |
1355174 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
1355175 |
ggaagacatgggcacctcagcttaagatcttagctcatggagcaattggtg |
1355225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 8 - 258
Target Start/End: Original strand, 14588934 - 14589184
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
14588934 |
ggattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctt |
14589033 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||| || |||||||||||||| ||| |||||||||||||| ||||||||| |||||||| || |||||||||||||||||| | ||||| |||| |
|
|
| T |
14589034 |
tctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgttt |
14589133 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattggtg |
258 |
Q |
| |
|
||||||| |||| ||| || ||||||||||| |||||||||||||||||| |
|
|
| T |
14589134 |
ggaaaacttgggtaccccagtttaagatcttaactcatggatcaattggtg |
14589184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 254
Target Start/End: Original strand, 14622592 - 14622838
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
14622592 |
ggattcaaaagaatcatcttctattgtttacattggatttgggagcgagtcgaagttaagtcaacaagatataactgagttagctcatggaattgagctt |
14622691 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||| || |||||||||||||| ||| |||||||||||||| ||||||||| |||||||| || |||||||||||||||||| | ||||| |||| |
|
|
| T |
14622692 |
tctaggttaccgttcttttgggctttaaaagatcttaaagagggtgtacttgaattgcctaaagggttcgaggaaagaacaaaagaacgcggaattgttt |
14622791 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaatt |
254 |
Q |
| |
|
||||||| |||||||| || ||||||||||| |||||| ||||||| |
|
|
| T |
14622792 |
ggaaaacttgggcaccccagtttaagatcttaactcatgaatcaatt |
14622838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 12846489 - 12846737
Alignment:
| Q |
8 |
ggattcaaaagaatcatcttctgttgtttacattggatttgggagcgagttgaagttaagccaacaagatctaatcgagttagcgcatggaattgagctt |
107 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| ||||| ||||||||||||||| |
|
|
| T |
12846489 |
ggattcaagagaatcatcttccgttgtttacattggatttgggagcgagttgaggttaacgcaaaaagatctaaccgaattagctcatggaattgagctt |
12846588 |
T |
|
| Q |
108 |
tctaggttgcctttcttttgggctttgaaaaatcttaaagagggtacacttgaattacctaaaggatttgaggaaagaacaaaagaatgtggaatcgttt |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||||| || || |||| |||||| ||||||| |||| |
|
|
| T |
12846589 |
tctaggttacctttcttttgggctttgaaaaacctaaaaaagggtacacttgagttacctaaaggattcgaagatcgaaccaaagaacgtggaattgttt |
12846688 |
T |
|
| Q |
208 |
ggaaaacatgggcacctcaacttaagatcttagctcatggatcaattgg |
256 |
Q |
| |
|
|||||||||||||||| || |||||||||||| | |||||| ||||||| |
|
|
| T |
12846689 |
ggaaaacatgggcaccccagcttaagatcttatcccatggagcaattgg |
12846737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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