View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0112-INSERTION-2 (Length: 350)

Name: NF0112-INSERTION-2
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0112-INSERTION-2
NF0112-INSERTION-2
[»] chr7 (5 HSPs)
chr7 (1-346)||(27329826-27330171)
chr7 (123-181)||(27388212-27388270)
chr7 (284-343)||(12428238-12428298)
chr7 (290-346)||(18503440-18503496)
chr7 (290-346)||(43404934-43404990)
[»] chr6 (1 HSPs)
chr6 (283-331)||(20846093-20846141)
[»] chr4 (6 HSPs)
chr4 (285-341)||(7043933-7043989)
chr4 (288-346)||(624532-624590)
chr4 (284-346)||(23778785-23778847)
chr4 (284-346)||(41137880-41137942)
chr4 (115-161)||(48575504-48575550)
chr4 (287-339)||(30305850-30305902)
[»] chr5 (2 HSPs)
chr5 (288-346)||(8241102-8241160)
chr5 (290-346)||(8478853-8478909)
[»] chr3 (3 HSPs)
chr3 (292-346)||(36666516-36666570)
chr3 (288-346)||(48546225-48546283)
chr3 (290-346)||(4808005-4808061)
[»] chr2 (3 HSPs)
chr2 (288-346)||(18254641-18254699)
chr2 (288-346)||(34355773-34355831)
chr2 (283-327)||(42756213-42756257)
[»] scaffold1709 (1 HSPs)
scaffold1709 (288-341)||(223-276)
[»] scaffold1331 (1 HSPs)
scaffold1331 (288-341)||(45-98)
[»] chr1 (1 HSPs)
chr1 (290-331)||(45518379-45518420)


Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 27330171 - 27329826
Alignment:
Q  1 cttttgatgatcattaactcggaagtaattttgatttaaaatatatgaacaacaaattcacaaaaatcaccaatacataaatacatctaaacacatatat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27330171 cttttgatgatcgttaactcggaagtaattttgatttaaaatatatgaacaacaaattcacaaaaatcaccaatacataaatacatctaaacacatatat 27330072  T
Q  101 cactttaatattttactcattttaatcaaaaaccaattttataaaatcaattctttcaaaacttattttcatcatcacaaaactaaatatgcaacgactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  27330071 cactttaatattttactcattttaatcaaaaaccaattttataaaatcaattctttcaaaacttattttcatcatcacaaaactaaatatgcatctactt 27329972  T
Q  201 gtattgaatatattaattattcattttaatcatcacaaaactaaaaatattttacttattttaatcaaaaatcaattgtatatggttggggttcgaaccc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |     
T  27329971 gtattgaatatattaattattcattttaatcatcacaaaactaaaaatattttactcattttaatcaaaaaccaattgtatatggtcggggttcgaatct 27329872  T
Q  301 catacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  27329871 catacaccttacttcttcacattttaaatgtatgagctctaaccac 27329826  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 27388270 - 27388212
Alignment:
Q  123 taatcaaaaaccaattttataaaatcaattctttcaaaacttattttcatcatcacaaa 181  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27388270 taataaaaaaccaattttataaaatcaattctttcaaaacttattttcatcgtcacaaa 27388212  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 12428238 - 12428298
Alignment:
Q  284 ggttggggttcgaac-cccatacacctcacttctttacattttaaatgtatgagctctaac 343  Q
    ||||||||||||||| |||| |||||  ||||||  |||||| ||||||||||||||||||    
T  12428238 ggttggggttcgaactcccaaacacccaacttctccacatttaaaatgtatgagctctaac 12428298  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 18503496 - 18503440
Alignment:
Q  290 ggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||| ||||| |||||||  |||||| |||||| |||||| |||||||    
T  18503496 ggttcgaaccccagacaccccacttctccacatttaaaatgtgtgagctttaaccac 18503440  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 43404990 - 43404934
Alignment:
Q  290 ggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||| ||| |||||||||  |||||| |||||| ||||||||| ||||    
T  43404990 ggttcgaaccccaaacatctcacttctccacatttaaaatgtgtgagctctatccac 43404934  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 20846093 - 20846141
Alignment:
Q  283 tggttggggttcgaaccccatacacctcacttctttacattttaaatgt 331  Q
    |||||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  20846093 tggttggggttcgaaccctatacaccacacttctctacatttaaaatgt 20846141  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 7043933 - 7043989
Alignment:
Q  285 gttggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctcta 341  Q
    |||||||||||||| ||| || ||||||||||  |||||| ||||||||||||||||    
T  7043933 gttggggttcgaactccagactcctcacttctccacatttaaaatgtatgagctcta 7043989  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 624532 - 624590
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||  ||||| |||||||  |||||| |||||| ||||||||||||||    
T  624532 ggggttcgaacccctgacaccccacttctccacatttaaaatgtgtgagctctaaccac 624590  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 23778847 - 23778785
Alignment:
Q  284 ggttggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||||||| ||||| |||||||  ||| || || ||| ||||||||||||||    
T  23778847 ggttggggttcgaaccccagacaccccacttctccacaattaaattgtgtgagctctaaccac 23778785  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 41137942 - 41137880
Alignment:
Q  284 ggttggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    |||||||||||||||| || ||||| |||||||| | |||| |||||| ||||||||| ||||    
T  41137942 ggttggggttcgaaccacagacaccccacttcttcatatttaaaatgtttgagctctagccac 41137880  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 48575504 - 48575550
Alignment:
Q  115 actcattttaatcaaaaaccaattttataaaatcaattctttcaaaa 161  Q
    ||||||||| |||||||| |||||||| ||||||||||| |||||||    
T  48575504 actcatttttatcaaaaatcaattttacaaaatcaattcattcaaaa 48575550  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 30305850 - 30305902
Alignment:
Q  287 tggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctc 339  Q
    |||||||||||||||  |||||||||||||  |||||| |||||| |||||||    
T  30305850 tggggttcgaaccccggacacctcacttctccacatttaaaatgtgtgagctc 30305902  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 8241102 - 8241160
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||  ||||| |||||||  |||||| |||||| ||||||||||||||    
T  8241102 ggggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctctaaccac 8241160  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 8478909 - 8478853
Alignment:
Q  290 ggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||||||  |||||||| ||| ||||| ||| ||||||||| ||||    
T  8478909 ggttcgaaccccatacactccacttcttcacaatttaattgtgtgagctctagccac 8478853  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 36666516 - 36666570
Alignment:
Q  292 ttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||| ||||| |||||||  ||||||  ||||||||||||||||||||    
T  36666516 ttcgaaccccagacaccccacttctccacatttataatgtatgagctctaaccac 36666570  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 48546225 - 48546283
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||  ||||||||||||| |||| || || ||| ||||||||||||||    
T  48546225 ggggttcgaaccccggacacctcacttctctacaattaaattgtgtgagctctaaccac 48546283  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 4808061 - 4808005
Alignment:
Q  290 ggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    |||||||||||   ||||| ||||||| ||||||| |||||| ||||||||||||||    
T  4808061 ggttcgaaccctgaacaccccacttctctacatttaaaatgtgtgagctctaaccac 4808005  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 18254641 - 18254699
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||| ||| ||||| |||||||| |||||| |||||| ||||||| ||||||    
T  18254641 ggggttcgaactccagacaccccacttcttcacatttaaaatgtgtgagctccaaccac 18254699  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 34355773 - 34355831
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctctaaccac 346  Q
    ||||||||||||||| ||||  |||||||  ||| ||||| ||||||||||||||||||    
T  34355773 ggggttcgaaccccagacactccacttctccacaatttaattgtatgagctctaaccac 34355831  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 42756213 - 42756257
Alignment:
Q  283 tggttggggttcgaaccccatacacctcacttctttacattttaa 327  Q
    |||| ||||||||||| ||||||||| ||||||| ||||||||||    
T  42756213 tggtcggggttcgaactccatacaccccacttctctacattttaa 42756257  T

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Target: scaffold1709 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 223 - 276
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctcta 341  Q
    ||||||||||||||| |||| ||||||||  ||| ||||| |||||||||||||    
T  223 ggggttcgaaccccaaacacttcacttctccacaatttaattgtatgagctcta 276  T

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Target: scaffold1331 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1331
Description:

Target: scaffold1331; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 98 - 45
Alignment:
Q  288 ggggttcgaaccccatacacctcacttctttacattttaaatgtatgagctcta 341  Q
    ||||||||||||||| |||| ||||||||  ||| ||||| |||||||||||||    
T  98 ggggttcgaaccccaaacacttcacttctccacaatttaattgtatgagctcta 45  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Original strand, 45518379 - 45518420
Alignment:
Q  290 ggttcgaaccccatacacctcacttctttacattttaaatgt 331  Q
    |||||||||| |||||||||||||||| ||||||| ||||||    
T  45518379 ggttcgaacctcatacacctcacttctctacatttaaaatgt 45518420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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