View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0112-INSERTION-5 (Length: 231)
Name: NF0112-INSERTION-5
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-5 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1445896 - 1445671
Alignment:
| Q |
1 |
cttccaaaatttgttccaccatgcctttcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttag |
100 |
Q |
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| T |
1445896 |
cttccaaaatttgttccaccatgcctttcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttag |
1445797 |
T |
|
| Q |
101 |
caacatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1445796 |
caacatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaag |
1445697 |
T |
|
| Q |
201 |
ggcttatgcaacatgtaaattttcat |
226 |
Q |
| |
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||||| |||||||||||||||||||| |
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| T |
1445696 |
ggcttctgcaacatgtaaattttcat |
1445671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 12105575 - 12105712
Alignment:
| Q |
88 |
cacactatgttagcaacatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaa |
187 |
Q |
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|||| ||||||||||| || ||||||||| |||||| |||||||||||| ||||||||| ||||||||| | |||| ||||| ||||||||| | ||| |
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| T |
12105575 |
cacattatgttagcaaaatttattctgaagaattcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaa |
12105674 |
T |
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| Q |
188 |
cctcatgttcaagggcttatgcaacatgtaaattttca |
225 |
Q |
| |
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| T |
12105675 |
cctcgtgttcaagagcttctgcaacatgtcaactttca |
12105712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 1459193 - 1459054
Alignment:
| Q |
2 |
ttccaaaatttgttccaccatgcctttcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagc |
101 |
Q |
| |
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| T |
1459193 |
ttccaaaatctgttccatcttgccttttattaaaccttacaacttgcactttgcgggacattggatttccaga-cttc--cgtcagcacattttgttagc |
1459097 |
T |
|
| Q |
102 |
aacatatattctgaacaattcatcagttttagaaactatgtca |
144 |
Q |
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| T |
1459096 |
aagatatattctgaacaactcagcagttttagaaactatgtca |
1459054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 225
Target Start/End: Complemental strand, 45810346 - 45810124
Alignment:
| Q |
3 |
tccaaaatttgttccaccatgcctttcactaagccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagca |
102 |
Q |
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|||||||| ||||||| | ||||||||| ||| ||| | || ||| ||||| ||||||||| ||||||||| | |||| | | || |||||||||| |
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| T |
45810346 |
tccaaaatctgttccaacttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaacgtaatcatgttatgttagca |
45810247 |
T |
|
| Q |
103 |
acatatattctgaacaattcatcagttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaaggg |
202 |
Q |
| |
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| | ||||||||| ||| || |||||||||||||||| ||||||||||| ||||||||| ||| | ||||||| | | || | |||||| |||||| |
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| T |
45810246 |
aggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaactattatcttcatgtccaaggg |
45810147 |
T |
|
| Q |
203 |
cttatgcaacatgtaaattttca |
225 |
Q |
| |
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||| ||||| |||| || ||||| |
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| T |
45810146 |
cttctgcaaaatgtcaactttca |
45810124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Complemental strand, 10116490 - 10116391
Alignment:
| Q |
126 |
agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttatgcaacatgtaaattttca |
225 |
Q |
| |
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||||||||||||||||||||| ||||| | | | ||||| ||| | |||||||||| || |||||||| ||||||||| | ||||||||||| ||||| |
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| T |
10116490 |
agttttagaaactatgtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca |
10116391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 154
Target Start/End: Complemental strand, 965276 - 965158
Alignment:
| Q |
36 |
ccttaaaacatgctctatgagggactttggatttgcaggtcttcaacatgagcacactatgttagcaacatatattctgaacaattcatcagttttagaa |
135 |
Q |
| |
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||||| ||| ||| ||||| ||||||||| || |||||| | |||| | | |||| |||| |||||| || ||||||| | ||| || |||||||||| |
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| T |
965276 |
ccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttattctggagaatgcaagagttttagaa |
965177 |
T |
|
| Q |
136 |
actatgtcaatttggtgct |
154 |
Q |
| |
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||||||||||| ||||||| |
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|
| T |
965176 |
actatgtcaatgtggtgct |
965158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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