View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0112-INSERTION-6 (Length: 672)
Name: NF0112-INSERTION-6
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 151 - 661
Target Start/End: Original strand, 36015006 - 36015505
Alignment:
| Q |
151 |
caagttgttaatggtgcaattagaagagatcctactccagcattgacagactgaatcacaacttggtacgtaatttatttattggttttgtacatgcatg |
250 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36015006 |
caagttgttaatggtgcaattagaagagatcctactccagcattgacagactgaatcacaacttggta----atttatttattggttttgtacatg---- |
36015097 |
T |
|
| Q |
251 |
tctggttttgattggtgacaaataggttcagaacttatgcagtctattgcctcaattgtttgaggaataatccaaggaacaaaacatgaaatacaaggta |
350 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36015098 |
tctggttttgattggtgataaataggttcagaacttatgcagtctattgcctcaattgtttgaggaataatccaaggaacaaaacatgaaatacaaggta |
36015197 |
T |
|
| Q |
351 |
atatcatgccctttcaccaatatatagttgactaactaatttaaactttcttagtatgtcaccattaaagttttcagggatcaaacgtttagtgttagtg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36015198 |
atatcatgccctttcaccaatatatagttgactaactaatttaaactttcttagtatgtcaccattaaagttttcagggatcaaacatttagtgttagtg |
36015297 |
T |
|
| Q |
451 |
ctgaagaacattgatcatagtgttagtgctgaagaactgcggtatcagtttagcccaagtggcggcacaatagtgtttttctaccctagacgagaccgaa |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
36015298 |
ctgaagaacattgatcatagtgttagtgctgaagaactgcggcatcagtttagcccaagt---ggcacaatagtgtttctctaccctagacgagaccgaa |
36015394 |
T |
|
| Q |
551 |
gtctatgaacagttctaatgattagttgagttgcattgattctctaagccactaaggtggtgttagtgtaaacattcatttgaaatttcaatatttttaa |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36015395 |
gtctatgaacagttctaatgattagttgagttgcattgattctctaagccactaaggtggtgttagtgtaaacattcatttgaaatttcaatatttttaa |
36015494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 280 - 653
Target Start/End: Complemental strand, 4574323 - 4573959
Alignment:
| Q |
280 |
agaacttatgcagtctattgcctcaattgtttgaggaataatccaaggaacaaaacatgaaatacaaggtaatatcatgccctttcaccaatatatagtt |
379 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||| |
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|
| T |
4574323 |
agaacttatgcagtctattgcctcacttgtttgaggaaaaatgcaaggaacaaaacatgaaatacaatgtaatttcatgccctttcaccaatagatagtt |
4574224 |
T |
|
| Q |
380 |
gactaactaatttaaactttcttagtatgtcaccattaaagttttcagggatcaaacgtttagtgttagtgctgaagaacattgatcatagtgttagtgc |
479 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| ||| | |||||||||||| ||| | |||||||||||||||||||||||||||| |
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|
| T |
4574223 |
gactaactaatttcaactttcttagtatgtcatcattgaag--tacagggatcaaacattt--------ttgtgaagaacattgatcatagtgttagtgc |
4574134 |
T |
|
| Q |
480 |
tgaagaactgcggtatcagtt--tagcccaagtggcggcacaatagtgtttttctaccctagacgagacc--gaagtctatgaacagttctaatgattag |
575 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||||||| || ||||||| |||| || | || ||||||||||||| ||||||| || |
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|
| T |
4574133 |
tgaagaactgcggtatcagtttatagcacatgt---ggcacaatagtgcttctctaccccagacaaggtcattaaatctatgaacagttttaatgataag |
4574037 |
T |
|
| Q |
576 |
ttgagttgcattgattctctaagccactaaggtggtgttagtgtaaacattcatttgaaatttcaatatttttaaagg |
653 |
Q |
| |
|
||||||||| |||| ||| ||||| | |||||||||| || ||||||||||| |||||||||||| |||||||||| |
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|
| T |
4574036 |
ttgagttgctttgaatctataagctattaaggtggtgctaatgtaaacattcttttgaaatttcagattttttaaagg |
4573959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 36014893 - 36014947
Alignment:
| Q |
99 |
tcatggtatggctgatgtgctttgatgcaggggtgttatgtccacaatttttcaa |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36014893 |
tcatggtatggctgatgtgctttgatgcaggggtgttatgtccacaatttttcaa |
36014947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 36014194 - 36014237
Alignment:
| Q |
34 |
aagaataattataaaggtcactggtgttggtgtatattataaat |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36014194 |
aagaataattataaaggtcactggtgttggtgtatattataaat |
36014237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 417
Target Start/End: Original strand, 11761927 - 11762066
Alignment:
| Q |
278 |
tcagaacttatgcagtctattgcctcaattgtttgaggaataatccaaggaacaaaacatgaaatacaaggtaatatcatgccctttcaccaatatatag |
377 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||| |||| |
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|
| T |
11761927 |
tcagaacttatgcagtctattgcctcacttgtttgaggaaaaatgcaagaaacaaaatttgaaatacaaggcaatttcatgccctttcaccaatagatag |
11762026 |
T |
|
| Q |
378 |
ttgactaactaatttaaactttcttagtatgtcaccatta |
417 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| ||||| |
|
|
| T |
11762027 |
ttgactcactaatttcaactttcttagtatgtcatcatta |
11762066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 549 - 653
Target Start/End: Original strand, 11762750 - 11762854
Alignment:
| Q |
549 |
aagtctatgaacagttctaatgattagttgagttgcattgattctctaagccactaaggtggtgttagtgtaaacattcatttgaaatttcaatattttt |
648 |
Q |
| |
|
|||| |||||||| | ||||||| |||||||||| |||| | | ||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |
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|
| T |
11762750 |
aagtatatgaacaactttaatgataagttgagttgttttgaatatgtaagccactaaggtggtgttagtgtaaacattcttttgaaatttcagtgttttt |
11762849 |
T |
|
| Q |
649 |
aaagg |
653 |
Q |
| |
|
||||| |
|
|
| T |
11762850 |
aaagg |
11762854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 454 - 497
Target Start/End: Original strand, 11762665 - 11762708
Alignment:
| Q |
454 |
aagaacattgatcatagtgttagtgctgaagaactgcggtatca |
497 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||||||||||||| |
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|
| T |
11762665 |
aagaacattgatcgtagtgtcagttctgaagaactgcggtatca |
11762708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 282 - 369
Target Start/End: Complemental strand, 16999784 - 16999697
Alignment:
| Q |
282 |
aacttatgcagtctattgcctcaattgtttgaggaataatccaaggaacaaaacatgaaatacaaggtaatatcatgccctttcacca |
369 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||| ||| ||||||||| |||||||||||||||| | ||||||||| |||| |
|
|
| T |
16999784 |
aacttatgtagtctattgcctcacttgtttgaggaaaaatgcaaagaacaaaacttgaaatacaaggtaattttatgcccttttacca |
16999697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 656
Target Start/End: Complemental strand, 16999640 - 16999533
Alignment:
| Q |
549 |
aagtctatgaacagttctaatgattagttgagttgcattgattctctaagccactaaggtggtgttagtgtaaacattcatttgaaatttcaatattttt |
648 |
Q |
| |
|
|||||| |||||| || ||||| | |||||| |||| |||| ||| ||||| |||||| ||| |||||||||||||| | |||||||||||| | ||||| |
|
|
| T |
16999640 |
aagtctgtgaacatttttaatggtaagttgaattgctttgaatctgtaagctactaagttggggttagtgtaaacatgcttttgaaatttcagtgttttt |
16999541 |
T |
|
| Q |
649 |
aaaggcta |
656 |
Q |
| |
|
|||||||| |
|
|
| T |
16999540 |
aaaggcta |
16999533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 441
Target Start/End: Complemental strand, 27027035 - 27026932
Alignment:
| Q |
337 |
tgaaatacaaggtaatatcatgccctttcaccaatatatagttgactaactaatttaaactttcttagtatgtcaccattaaagttttcagggatcaaac |
436 |
Q |
| |
|
||||| ||| |||||| ||||||||||| || |||||||||||| ||| |||||| | ||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
27027035 |
tgaaacacatggtaattccatgccctttctcctatatatagttgaataattaatttcagctttcttagtatgtcactgtttaa-ctttcagggatcaaac |
27026937 |
T |
|
| Q |
437 |
gttta |
441 |
Q |
| |
|
|||| |
|
|
| T |
27026936 |
attta |
27026932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 603 - 640
Target Start/End: Complemental strand, 16319046 - 16319009
Alignment:
| Q |
603 |
taaggtggtgttagtgtaaacattcatttgaaatttca |
640 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16319046 |
taaggtggtgttagtgtaaacattcttttgaaatttca |
16319009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 621
Target Start/End: Complemental strand, 10650997 - 10650950
Alignment:
| Q |
574 |
agttgagttgcattgattctctaagccactaaggtggtgttagtgtaa |
621 |
Q |
| |
|
||||||| ||| |||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
10650997 |
agttgagctgctttgaatctgtaagccactaaggtggtgttagtgtaa |
10650950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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