View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0112-INSERTION-7 (Length: 686)
Name: NF0112-INSERTION-7
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-7 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 13796595 - 13797166
Alignment:
| Q |
1 |
ggatgaacaaagtaaagatcaagaccttgagcttgattttgtgcattgttgttatttctcaccatgatctacgaaatatcttaaactaatcaattaagaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13796595 |
ggatgaacaaagtaaagatcaagaccttgagcttgattttgtgcattgttgttatttctcaccatgatctacgaaatttcttaaactaatcaattaagaa |
13796694 |
T |
|
| Q |
101 |
actaacacgtagttgaatcaaagaaacgaaacaagaacaaatcaaaacgataatgaatcgatgaaaaacatattaagatgaaaatgatnnnnnnnttgaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |
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| T |
13796695 |
actaacacgtagttgaatcaaagaaacgaaacaagaacaaatcaaaacgataatgaatcg------------ttaagatgaaaatgataaaaaaatcgaa |
13796782 |
T |
|
| Q |
201 |
acgacagcggatcgattaaacatgaaagaagaagataaacaaaatcaatggataattcgttcaatcttcacgaagcggaagtagagcaagaggaacctgc |
300 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13796783 |
acgacagaagatcgattaaacatgaaagaagaagataaacaaaatcaatggataattcgttcaatcttcacgaagcggaagtagagcaagacaaacctgc |
13796882 |
T |
|
| Q |
301 |
tctgataccatcaaagcaattctcaaacatgatggaagatagagtttgctgaaaagtgaatactattcaatcaataaattctgtaatagattgtagctta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
13796883 |
tctgataccatcaaagcaattctcaaacatgatggaagatagagtttgctgaaaagtgaatattattcaatcaataaattctgtaatagattgtagctta |
13796982 |
T |
|
| Q |
401 |
tattcatgttacaaatgacaaccgatcataactaacatgtaactaaataaatgcaacacaaatgcaaatgaaatttaaactaaaattacatttctaaact |
500 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
13796983 |
tattcatgttacaaatgacaactgatcataactaacttgtaactaaataaatgcaacacaaatgaaaatgaaatttaaactaaaattacatttctaaact |
13797082 |
T |
|
| Q |
501 |
aactctaacttgcattccaagttatttgtggttaaactattctacgtttcttccttctcattagtagtatttgctaacatgctc |
584 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
13797083 |
aactctaacttgcattccaagttatttgtggttaaactattctacgtttcttccttctcattagtagtatttgctaagatgctc |
13797166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 640 - 675
Target Start/End: Original strand, 13797222 - 13797257
Alignment:
| Q |
640 |
cgatgtaaatcaatcttcaagtttatttacaataac |
675 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
13797222 |
cgatgtaaatcaatcttcaagtttatttacaataac |
13797257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 245 - 577
Target Start/End: Original strand, 9717362 - 9717702
Alignment:
| Q |
245 |
tcaatggataattcgttcaatcttcacgaagcggaagtagagcaagaggaacctgctctgataccatcaaagcaattctcaaacatgatggaa-gataga |
343 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||| ||||||||| |||||| |||| |||| |||||| |||||||||| ||| | | || |||| | |
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| T |
9717362 |
tcaatcgaaaattcgttcaatcttcacgaagcgaaagcagagcaagacgaacctcctctaatactatcaaaacaattctcaaccat-aggaaacgataaa |
9717460 |
T |
|
| Q |
344 |
gtttgctgaaaagtgaatactattcaatcaataaattctgtaatagattgtagcttatattcatgttacaaatgacaaccgatcataactaacatgtaac |
443 |
Q |
| |
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|||||||||||||||| || | | || | | |||| ||| | || ||||||||||||| || |||| || ||||| | ||||||||||| |||||| |
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| T |
9717461 |
gtttgctgaaaagtgattattttctcatga-tgaattttgttacagcttgtagcttatatacaagttagaattgacagctcatcataactaatttgtaac |
9717559 |
T |
|
| Q |
444 |
taaataaatgcaacacaaatgcaaa-tgaaatttaaactaaaattacat--------ttctaaactaactctaacttgcattccaagttatttgtggtta |
534 |
Q |
| |
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||| ||||| ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||||||||| |||||| ||||||| |||||||| |
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| T |
9717560 |
taactaaatacaacacagttgcaaaatgaaattcaaactaaaattacataacttgcattctaagctaactctaactcgcattcaaagttatgtgtggtta |
9717659 |
T |
|
| Q |
535 |
aactattctacgtttcttccttctcattagtagtatttgctaa |
577 |
Q |
| |
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| | ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
9717660 |
agcaattctgcgtttcttccttctcattagtagtacttgctaa |
9717702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 245 - 577
Target Start/End: Original strand, 13583629 - 13583969
Alignment:
| Q |
245 |
tcaatggataattcgttcaatcttcacgaagcggaagtagagcaagaggaacctgctctgataccatcaaagcaattctcaaacatgatggaa-gataga |
343 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||| ||||||||| |||||| |||| |||| |||||| |||||||||| ||| | | || |||| | |
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| T |
13583629 |
tcaatcgaaaattcgttcaatcttcacgaagcgaaagcagagcaagacgaacctcctctaatactatcaaaacaattctcaaccat-aggaaacgataaa |
13583727 |
T |
|
| Q |
344 |
gtttgctgaaaagtgaatactattcaatcaataaattctgtaatagattgtagcttatattcatgttacaaatgacaaccgatcataactaacatgtaac |
443 |
Q |
| |
|
|||||||||||||||| || | | || | | |||| ||| | || ||||||||||||| || |||| || ||||| | ||||||||||| |||||| |
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|
| T |
13583728 |
gtttgctgaaaagtgattattttctcatga-tgaattttgttacagcttgtagcttatatacaagttagaattgacagctcatcataactaatttgtaac |
13583826 |
T |
|
| Q |
444 |
taaataaatgcaacacaaatgcaaa-tgaaatttaaactaaaattacat--------ttctaaactaactctaacttgcattccaagttatttgtggtta |
534 |
Q |
| |
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||| ||||| ||||||| |||||| ||||||| ||||||||||||||| |||||| |||||||||||| |||||| ||||||| |||||||| |
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| T |
13583827 |
taactaaatacaacacagttgcaaaatgaaattcaaactaaaattacataacttgcattctaagctaactctaactcgcattcaaagttatgtgtggtta |
13583926 |
T |
|
| Q |
535 |
aactattctacgtttcttccttctcattagtagtatttgctaa |
577 |
Q |
| |
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| | ||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
13583927 |
agcaattctgcgtttcttccttctcattagtagtacttgctaa |
13583969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 23969943 - 23969890
Alignment:
| Q |
259 |
gttcaatcttcacgaagcggaagtagagcaagaggaacctgctctgataccatc |
312 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||| |||||| |||||||| |
|
|
| T |
23969943 |
gttcaatcttcacgaagcggaagcagagcaggacgaacttgctctaataccatc |
23969890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 355
Target Start/End: Complemental strand, 13470301 - 13470172
Alignment:
| Q |
225 |
aaagaagaagataaacaaaatcaatggataattcgttcaatcttcacgaagcggaagtagagcaagaggaacctgctctgataccatcaaagcaattctc |
324 |
Q |
| |
|
||||| |||||| || |||||||||||| ||| ||||||||| ||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||| |
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|
| T |
13470301 |
aaagatgaagatggacgaaatcaatggatgatttgttcaatct-cacgaagtggaagcagagccggacgaacctgctctgataccatcaaatcaattctc |
13470203 |
T |
|
| Q |
325 |
aaacatgatggaagatagagtttgctgaaaa |
355 |
Q |
| |
|
|||||||| ||| ||||| |||| |||||| |
|
|
| T |
13470202 |
aaacatgagagaatatagaatttggtgaaaa |
13470172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 28584558 - 28584634
Alignment:
| Q |
1 |
ggatgaacaaagtaaagatcaagaccttgagcttgattttgtgcattgttgttatttctcaccatgatctacgaaat |
77 |
Q |
| |
|
||||||||||| ||| |||||||||||||| ||| ||| || |||||||||||||||||||||||||| | |||||| |
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|
| T |
28584558 |
ggatgaacaaaataaggatcaagaccttgatcttaattctgcgcattgttgttatttctcaccatgattttcgaaat |
28584634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 259 - 332
Target Start/End: Original strand, 28584788 - 28584861
Alignment:
| Q |
259 |
gttcaatcttcacgaagcggaagtagagcaagaggaacctgctctgataccatcaaagcaattctcaaacatga |
332 |
Q |
| |
|
|||||||||||||||| | |||| |||||| || ||||||||||||||||||| ||| | ||||||||||||| |
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|
| T |
28584788 |
gttcaatcttcacgaaactgaagcagagcaggacgaacctgctctgataccatgtaagtacttctcaaacatga |
28584861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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