View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0112-INSERTION-8 (Length: 594)
Name: NF0112-INSERTION-8
Description: NF0112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0112-INSERTION-8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 8 - 594
Target Start/End: Complemental strand, 4764817 - 4764243
Alignment:
| Q |
8 |
atcataacatgatccgaggnnnnnnngaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaacc |
107 |
Q |
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| T |
4764817 |
atcataacatgatccgaggaagaaaagaaagtggaagcaccttttatctctatgaagtggaaacaaaaaacgttaagaggagcagatatctcaccaaacc |
4764718 |
T |
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| Q |
108 |
acagcagaatccctcacaagggagcggcgacactaaccctaggagcggcggannnnnnnccagtcatataannnnnnnnataaaattcaaatcatttatt |
207 |
Q |
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| T |
4764717 |
acaacagaatccctcacaagggagtggcgacgctaaccctaggagcggcggctttttttccagtgatataattttttt-ataaaattcaaatcatttatt |
4764619 |
T |
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| Q |
208 |
tcttaatcgtccttttatctagaagtgtttgagtggcattttgaatatgttaggttttcccactccccagtttaccaatattattttgcatgccaaacaa |
307 |
Q |
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| T |
4764618 |
tcttaatcgtccttttatctagaagtgtttgagtggcattttgaatatgttaggttttcccactccccagtttaccaatattattttgcatgccaaacaa |
4764519 |
T |
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| Q |
308 |
ttttgtggtcttcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctg |
407 |
Q |
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| T |
4764518 |
ttttgtggtcttcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctg |
4764419 |
T |
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| Q |
408 |
tatagttgcaacgatatgtgtgggtttttaagtcgtgtgtaaagacaagttagctggtggataaggctagttaaaaaactttgttttttgatcttgatta |
507 |
Q |
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| T |
4764418 |
tatagttgcaacgatatgtgtgggtttttaagtcgtgtgtaaagacaagttagctggtggataaggctagttaaaaaactttgttttttgatcttgatta |
4764319 |
T |
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| Q |
508 |
gggtgttaaaaactgaatcaacccaatagaaaaatctgtaaaccaaataatcaaaatctaaaccgtaataaatatatttggttggga |
594 |
Q |
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| T |
4764318 |
gggtgttaaaaaccgaatcaacccaatag-----------aaccaaataatcaaaatctaaaccgtaataaatgtatttggttggga |
4764243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 315 - 540
Target Start/End: Complemental strand, 4670398 - 4670175
Alignment:
| Q |
315 |
gtcttcattcttttataaaggaaatacgtaaatgctttcatgcaatatgattgctttctctgaactagtttgattgatcgaaagaatatgctgtatagtt |
414 |
Q |
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| T |
4670398 |
gtcttcattcttttataaaagaatcccgtaaatgctttcatgcaatatgattgctttctctggactagtttgattgatcgaaagaatatgctctatagtt |
4670299 |
T |
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| Q |
415 |
gcaacgatatgtgtgggtttttaagtcgtgtgtaaagacaagttagctggtggataaggctagttaaaaaactttgttttttgatcttgattagggtgtt |
514 |
Q |
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| T |
4670298 |
gcaaagataagtgtgggttttttaatcgtgtgtaaagacaagttagccggtggataaggctagttcaaaaacttcg-tttttgatattgattagggtgtt |
4670200 |
T |
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| Q |
515 |
aaaaactgaatcaacccaatagaaaa |
540 |
Q |
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| T |
4670199 |
aaaaac-caatcaacctaatagaaaa |
4670175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 4670441 - 4670407
Alignment:
| Q |
201 |
atttatttcttaatcgtccttttatctagaagtgt |
235 |
Q |
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| T |
4670441 |
atttatttcttaattgtccttttatctagaagtgt |
4670407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 543
Target Start/End: Complemental strand, 7697945 - 7697907
Alignment:
| Q |
505 |
ttagggtgttaaaaactgaatcaacccaatagaaaaatc |
543 |
Q |
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| T |
7697945 |
ttagggtgttcaaaactgaatcaatccaatagaaaaatc |
7697907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 19061253 - 19061338
Alignment:
| Q |
74 |
aaaacgttaagaggagcagatatctcaccaaaccacagcagaatccctcacaaggg-agcggcgacactaaccctaggagcggcgg |
158 |
Q |
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| T |
19061253 |
aaaacgttcaggggagaagaaatctcaacgaacgacggcaaaatccctcacaagggtagcggcggcaagaaccctaggagcggcgg |
19061338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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